Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
325 (301) |
PWM (Da): |
34666.53 (32084.1) |
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PI (pH):
| 5.21 (5.18) |
Peptide Signal:
| cut: 25 range:25-325 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MGFRETGALL LTLVLGLRVT QLEAQLQVGF YDGSCPNAER IVAEEVVKAL VTHPDLPADL LRLHFHDCFV RGCDGSVLLD STPGSTAEKD SPINGSLEGY DVVDNAKTRL EAACPGIVSC
ADIVAFAARD SVKLSKGIPY DVPAGRRDGR VSLSSETFTN LPAPTLNLAQ LTENFASKGL TQEDMVTLSG AHTIGEARCS SITGRLYDFN STGKADPSLD PAYAARLKKK CPPDSVNSNR
GVDMDPPSPT IIDSSYYRNL LINRGLFTSD QTLMSSPVTA SQVLRNAVND SLFRENFAAA MVKMGQVEVL TGASGEIRKK CNVIN
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Retrieve as FASTA
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Remarks |
Complete sequence from genomic (3 introns). Incorrect prediction from Phytozome (PS is missing). |
Promoter►
Send to BLAST
Send to cis Analysis
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DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGTTTTA GAGAGACGGG GGCGCTGCTG CTGACGCTTG TACTGGGCTT GCGTGTGACC CAGCTTGAGG CTCAGCTTCA AGTAGGGTTC TACGATGGTT CCTGCCCTAA CGCTGAGAGA
ATCGTTGCAG AGGAGGTGGT TAAGGCGCTG GTAACGCATC CCGATCTGCC TGCTGATCTG CTGAGGCTGC ATTTCCACGA CTGCTTCGTC AGGGTAATTT TTCCCCCTCA AACTCCGCAC
AAAGCTTATT ATTAACGATG GAGCCTGCAG GGGAAGCGTT TAATGGCTCA TTTTTTCTGA GTTTGACGCT CTCTGGGGGC CTTGCTCTTC CAAAGGGTTG CGATGGATCG GTCCTCCTCG
ACTCAACTCC GGGCAGCACC GCGGAGAAGG ACTCGCCAAT CAACGGCAGC CTTGAAGGCT ACGATGTCGT CGATAACGCT AAAACCAGGC TGGAGGCAGC TTGCCCGGGG ATCGTCTCGT
GTGCCGACAT CGTCGCCTTC GCCGCCAGAG ACAGCGTTAA ACTGGTAACC CACCCTTTTG AGCGGACGAT TCCTGAACCG TTCGCTCACT GCTCGGCCTG TTCTTCAACT GCTTGAGGTG
ATCAAGTTCT CACACCATCT TGGGCAGAGC AAGGGCATTC CCTACGATGT TCCAGCCGGA AGAAGGGACG GCAGGGTTTC CTTGAGCTCG GAGACGTTCA CAAATTTGCC TGCACCCACC
CTCAACCTCG CTCAGCTCAC TGAGAATTTC GCCAGCAAGG GCCTGACCCA GGAGGACATG GTCACACTCT CCGGTGCGTT TTGGATTCAG ATCTCGCTGC GGAAGTTATC TCCTCCAGAA
CTAAATTTTG CCATCCTCAC CGAGGCCTTT GTTTTGCATA ATCAGGTGCG CATACGATCG GCGAGGCCCG CTGCTCCTCC ATCACTGGCA GGCTTTACGA CTTCAACTCC ACCGGGAAGG
CTGACCCGAG CTTGGATCCA GCCTATGCGG CCAGACTGAA GAAAAAGTGC CCGCCAGACA GCGTTAATAG CAACCGGGGA GTGGATATGG ACCCTCCCAG TCCCACCATT ATCGACTCGA
GCTACTACAG GAACCTCCTC ATCAACCGCG GGTTGTTCAC GTCCGATCAG ACCCTCATGT CTAGCCCGGT GACGGCTTCG CAGGTGTTGC GGAACGCCGT TAATGACTCA CTCTTCAGGG
AGAACTTCGC GGCCGCCATG GTGAAAATGG GTCAGGTTGA GGTCCTCACC GGAGCCAGCG GGGAGATCCG CAAGAAATGC AACGTCATTA AC
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGTTTTA GAGAGACGGG GGCGCTGCTG CTGACGCTTG TACTGGGCTT GCGTGTGACC CAGCTTGAGG CTCAGCTTCA AGTAGGGTTC TACGATGGTT CCTGCCCTAA CGCTGAGAGA
ATCGTTGCAG AGGAGGTGGT TAAGGCGCTG GTAACGCATC CCGATCTGCC TGCTGATCTG CTGAGGCTGC ATTTCCACGA CTGCTTCGTC AGGGGTTGCG ATGGATCGGT CCTCCTCGAC
TCAACTCCGG GCAGCACCGC GGAGAAGGAC TCGCCAATCA ACGGCAGCCT TGAAGGCTAC GATGTCGTCG ATAACGCTAA AACCAGGCTG GAGGCAGCTT GCCCGGGGAT CGTCTCGTGT
GCCGACATCG TCGCCTTCGC CGCCAGAGAC AGCGTTAAAC TGAGCAAGGG CATTCCCTAC GATGTTCCAG CCGGAAGAAG GGACGGCAGG GTTTCCTTGA GCTCGGAGAC GTTCACAAAT
TTGCCTGCAC CCACCCTCAA CCTCGCTCAG CTCACTGAGA ATTTCGCCAG CAAGGGCCTG ACCCAGGAGG ACATGGTCAC ACTCTCCGGT GCGCATACGA TCGGCGAGGC CCGCTGCTCC
TCCATCACTG GCAGGCTTTA CGACTTCAAC TCCACCGGGA AGGCTGACCC GAGCTTGGAT CCAGCCTATG CGGCCAGACT GAAGAAAAAG TGCCCGCCAG ACAGCGTTAA TAGCAACCGG
GGAGTGGATA TGGACCCTCC CAGTCCCACC ATTATCGACT CGAGCTACTA CAGGAACCTC CTCATCAACC GCGGGTTGTT CACGTCCGAT CAGACCCTCA TGTCTAGCCC GGTGACGGCT
TCGCAGGTGT TGCGGAACGC CGTTAATGAC TCACTCTTCA GGGAGAACTT CGCGGCCGCC ATGGTGAAAA TGGGTCAGGT TGAGGTCCTC ACCGGAGCCA GCGGGGAGAT CCGCAAGAAA
TGCAACGTCA TTAAC
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Retrieve as FASTA
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