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Entry information : VbraAPx01
Entry ID 13536
Creation 2016-02-29 (Mbadinga)
Last sequence changes 2016-02-29 (Christophe Dunand)
Sequence status complete
Reviewer Mbadinga
Last annotation changes 2016-02-29 (Mbadinga)
Peroxidase information: VbraAPx01
Name VbraAPx01
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Alveolata; Other Alveolata; Other Alveolata; Other Alveolata
Organism Vitrella brassicaformis    [TaxId: 1169539 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VbraAPx01
start..stop		 S start..stop
GtAPx02 337 1.08e-114 77..364 68..364
SsAPx04_AU1 336 9.62e-114 36..365 45..352
SmAPx04-2_36 332 2.92e-112 60..365 56..341
SmAPx04-1_7 331 6.74e-112 60..365 56..341
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13536' 'complement(join(190542..190738,190836..191139,191199..191308,191418..191537,191608..191713,191770..192030))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 191770..192030 259 N° 2 191608..191713 104 N° 3 191418..191537 118 N° 4 191199..191308 108
N° 5 190836..191139 302 N° 6 190542..190738 195  
complement(join(190542..190738,190836..191139,191199..191308,191418..191537,1916 08..191713,191770..192030))


exon

Literature and cross-references VbraAPx01
Protein ref. GenBank:   CEM29166.1
DNA ref. GenBank:   CDMY01000666.1 (192030..190542)
Protein sequence: VbraAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   365
PWM (Da):   %s   39713.57  
PI (pH):   %s   4.9
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACVSAFSLQRITHNGPSSLRRSAQRLHPSPASPLSFSLSRADSGALLVLRAEEESKGSQAVAVKDGEGDELAVRKEELLKCRDALRDLIDETAAFGILIRAAWHDAGTYDAKKEGEWPK
KGGANGSIRFPEETSHAANAGLDNAIKLLQPIKDRFQSVSWADILQMASAVAIEMAGGPKIAMQYGRVDVDSPEDCPKEGNLPDGAAPFGDGAETPAQHLRNVFYRMGLDDQEIVALSGA
HTVGRAWKNRSGFGRGEEGTNYTTGEHTDLRQDGKGYYGKEGGMSWTPRWLLFDNSYFTAVNADDDPELLKLQTDTCLFADEAFRPYALKYADSQEAFFADYSAAHKKLSELGSKFDPPE
GITLD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCGTGTCCGCTTTCTCTCTCCAGCGTATTACACACAACGGTCCCTCATCGCTACGACGCTCGGCGCAACGATTGCATCCATCGCCGGCCAGCCCGCTGTCTTTTTCATTGAGT
AGGGCTGATAGTGGTGCCTTGCTGGTGTTGCGGGCGGAGGAAGAGAGCAAGGGCAGTCAGGCGGTGGCTGTCAAGGACGGGGAAGGCGATGAGTTGGCAGTGAGGAAAGAGGAGCTGCTC
AAGTGCCGCGACGCTTTGAGGGTAGGTCAGTGAGTGCTGCGTGTTCAAGTGATGAATGCATCTTTGCTTCCTTGCAGGAGACCTCATTGACGAGACCGCTGCTTTTGGCATTCTCATCCG
GGCGGCGTGGCATGACGCAGGCACCTACGACGCCAAAAAGGAGGGCGAATGGCCGAAGAAAGGAGGTACCCACAGACACAATGAATCTGCGTGTCCTGGCTGCATGAGCGCGAGTGTATT
GGTGGGTGTGTGCAGGTGTGCGAATGGCAGCATTCGTTTCCCGGAGGAGACCTCCCATGCGGCCAACGCTGGCCTCGACAACGCCATCAAGCTGCTGCAGCCAATTAAGGACAGATTCCA
ATCCGTCAGCTGGGCTGGTGTGTACGGAAGCACGCACACCACGTGTGTGTATCACGAACACAAGTGGACATCCTCGTTTCCCTTTTCGGTCGCTACCGTCGCAGTCATGTTTGTGTTGTT
GCTCAGACACATTCTGCAGATGGCCTCTGCTGTGGCGATAGAGATGGCTGGCGGCCCGAAGATTGCGATGCAATACGGTAGAGTAGACGTCGACAGCCCTGAAGACTGCCCCAAAGAGGT
GAGGAACAAGAACACACACACATCATTTTCCGCCCGATCGTCTGTGTGTTCGTGCAGGGGGCAACCTTCCCGACGGCGCAGCGCCGTTTGGCGATGGCGCCGAAACACCCGCCCAGCACC
TGAGGAACGTCTTTTATCGGATGGGCCTTGATGACCAAGAGATTGTGGCGCTCAGCGGTGCTCACACCGTCGGGCGGGCGTGGAAAAACAGATCTGGCTTTGGCAGGGGCGAGGAAGGGA
CCAACTACACCACTGGCGAGCACACAGACTTGCGACAAGACGGCAAGGGCTACTACGGGAAGGAGGGTGGCATGTCGTGGACACCGCGGTGGCTGCTCTTCGACAACTCTTACTTCACAG
CAGGTAGGGCAGGAAGGGAGATGGATGCAAGTGGGTCGATGTGATCTCTCTCTTTCTCTTCCTCTCTCTCTGTGGATGTGTCTTCCCCTATCCCCTTCAGTGTGAATGCTGATGACGACC
CGGAGCTGCTCAAGCTCCAGACAGACACGTGTCTGTTCGCTGATGAGGCCTTCCGACCGTATGCGCTGAAGTACGCCGACAGCCAAGAGGCCTTCTTCGCTGACTATTCCGCCGCACACA
AGAAGCTCTCAGAGCTGGGCAGCAAGTTTGATCCTCCAGAAGGCATCACGCTGGACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCGTGTCCGCTTTCTCTCTCCAGCGTATTACACACAACGGTCCCTCATCGCTACGACGCTCGGCGCAACGATTGCATCCATCGCCGGCCAGCCCGCTGTCTTTTTCATTGAGT
AGGGCTGATAGTGGTGCCTTGCTGGTGTTGCGGGCGGAGGAAGAGAGCAAGGGCAGTCAGGCGGTGGCTGTCAAGGACGGGGAAGGCGATGAGTTGGCAGTGAGGAAAGAGGAGCTGCTC
AAGTGCCGCGACGCTTTGAGGGACCTCATTGACGAGACCGCTGCTTTTGGCATTCTCATCCGGGCGGCGTGGCATGACGCAGGCACCTACGACGCCAAAAAGGAGGGCGAATGGCCGAAG
AAAGGAGGTGCGAATGGCAGCATTCGTTTCCCGGAGGAGACCTCCCATGCGGCCAACGCTGGCCTCGACAACGCCATCAAGCTGCTGCAGCCAATTAAGGACAGATTCCAATCCGTCAGC
TGGGCTGACATTCTGCAGATGGCCTCTGCTGTGGCGATAGAGATGGCTGGCGGCCCGAAGATTGCGATGCAATACGGTAGAGTAGACGTCGACAGCCCTGAAGACTGCCCCAAAGAGGGC
AACCTTCCCGACGGCGCAGCGCCGTTTGGCGATGGCGCCGAAACACCCGCCCAGCACCTGAGGAACGTCTTTTATCGGATGGGCCTTGATGACCAAGAGATTGTGGCGCTCAGCGGTGCT
CACACCGTCGGGCGGGCGTGGAAAAACAGATCTGGCTTTGGCAGGGGCGAGGAAGGGACCAACTACACCACTGGCGAGCACACAGACTTGCGACAAGACGGCAAGGGCTACTACGGGAAG
GAGGGTGGCATGTCGTGGACACCGCGGTGGCTGCTCTTCGACAACTCTTACTTCACAGCAGTGAATGCTGATGACGACCCGGAGCTGCTCAAGCTCCAGACAGACACGTGTCTGTTCGCT
GATGAGGCCTTCCGACCGTATGCGCTGAAGTACGCCGACAGCCAAGAGGCCTTCTTCGCTGACTATTCCGCCGCACACAAGAAGCTCTCAGAGCTGGGCAGCAAGTTTGATCCTCCAGAA
GGCATCACGCTGGACTGA

Retrieve as FASTA