View Redoxidase 13667

Entry information : HaTrxF01 (HanXRQChr17g0556061)

Entry ID	13667
Creation	2016-05-11 (Christophe Dunand)
Last sequence changes	2017-11-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2017-11-23 (Catherine Mathe (Scipio))

Peroxidase information: HaTrxF01 (HanXRQChr17g0556061)

Name (synonym)

HaTrxF01 (HanXRQChr17g0556061)

Class

Thioredoxin Type F [Orthogroup: TrxF001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus

Organism

Helianthus annuus (Sunflower) [TaxId: 4232 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	HaTrxF01 start..stop	S start..stop
HaTrxH03	207	2.11e-68	1..174	63..245
AtTrxF01	199	3.86e-66	16..174	16..175
AtTrxF02	199	3.98e-66	56..174	66..185
ThasTrxF01	192	1.25e-63	44..174	50..180

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13667' 'complement(join(107426169..107426300,107427104..107427203,107428369..107428658))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	107428369..107428658	288	N° 2	107427104..107427203	98	N° 3	107426169..107426300	130
complement(join(107426169..107426300,107427104..107427203,107428369..107428658))

Literature and cross-references HaTrxF01 (HanXRQChr17g0556061)

DNA ref.	HanXRQ genome: HanXRQChr17 (107428658..107426169)
EST ref.	GenBank: GE517490.1

Protein sequence: HaTrxF01 (HanXRQChr17g0556061)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	174
PWM (Da):	19015.15
PI (pH):	9.51

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAVQIHQLCRPVPPPPSTTAIGSLPSCFTKQSTVSGDRYPFKSVNKKKGLRSLVTVRSSLETAVVVGQVTEVSQDTFWPIVNAAGDKTVVLDMYTQWCGPCKVIAPKFKELSEKYLDVVF
LKLDCNQDNALAKELGIKVVPTFKILKDSKIVKEVTGAKFDNLVVAIEEVRSS

Retrieve as FASTA

Remarks

Complete sequence from genomic and EST

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCGTACAGATTCATCAACTCTGCCGGCCGGTACCACCACCACCGTCTACGACGGCGATCGGCTCACTGCCGTCATGCTTTACAAAGCAGTCTACAGTTTCCGGAGACCGTTACCCG
TTTAAATCTGTGAATAAGAAGAAAGGACTGAGGTCATTGGTGACGGTTAGGTCAAGTTTGGAAACCGCGGTGGTTGTCGGTCAGGTGACGGAGGTTAGTCAGGATACGTTTTGGCCGATT
GTGAATGCAGCCGGTGATAAGACTGTTGTTCTCGATATGTACACTCAGTGGTAAGTCCAATTTTGAGTAGAATTGTTTAGTTTTTGAAGATGTGATATGGTTATATAGATTGAATATATA
CCTGATTTGTGTCTACAGAATTCAGGCAGTTTTTGTTTCGGAAATTTGTTAGGTTTTTAAATTGTAGCGGACGGATTAGGCTCAGAAATTGGTTCAACTCGGTTGTACCGGCAACTGACT
AATAAACACTACAATCCATAAAATACAATTTTTACTCAAAAAGTAATCCAAAATTACATCATTTCATAATAAAAATATTCCAAAAGTTAATCCATAATAAAAAAATAATCCAAAAATTCA
CTATTGGTACTTTTTTTTATGCAGAGTAAGTCATCATCGTTTTGGGCCATTAAAACTCTAAATTTTAACATTTGACCCGGCACTGGTATACCGGTATAACCCAATTTACCGGTGGTATAA
CATCTTTGCCGTTCCCTCAATTTACCGGTGTGATTCGTGCCGGCCAAACTTCCAACATCCGGTTTAACCGGCTCCGGCCGGTATAAACCGGTTTTTAAAACATTGAGTGCAACAGATTTT
GATTAATTAAACTTACTCAAAATTTGCAAATAGGGCAACTCCATCGAAAGTTGCAGATACATGTTTTGTTTATTCATTTTCGTGCAAACTCGAAAAAGTAGGTCTTATACTCATGCTAGT
TGATTTGCCTGCTAATTTCTCGAGAATATCCTCCATCACAGCAGAGTTCTCAACGTCAACAAAATTTCATATAGTTCGCCTCCAATGTCAATTCTTGGATGTATATATACCCACAAACAG
AACAGAAGTAGCATATCTCTATCCAGAACAAATAAATTGTATTTCATCGTTTGCAAAAAATGCATAAATACTATGTCATACTTGTCACACATTTTTCTTTAGTTACATACTTGAACACAC
AATGTTTTTAGTCTATACTTTCCTAGGAACGTTAGTTACGTATATTGACAATCAATCATTCTTTTGTGCTAGTAATCTTAACTAAAATCGGACAAAGTAATGGGAATTAATATGATAATG
AGTATCACAAATATGTATATCTGTTACTCACATGTTTAAGAATTAAGATTACTACTTAGCTAGTTAGCTGTATTCTTTTCTTATATTGCCTCTTTCCCTAGTCATGTGGTGTTGATTGTC
CGATAAACTTGATAGGTGTGCGGTCCTTGCAAGGTCATTGCTCCAAAATTCAAAGAATTGTCTGAGAAGTATCTTGATGTGGTCTTTCTAAAGCTTGATTGCAATCAGGACAACAAGGTT
CGTTCTTAACTTTCTTTAATTCCTTTAAAGCATCATCTTTCCCCAACACCACACACCCATATTTGAAAACTCGACAAACACAGGGGTTGTAGAGATCGATTAATACTGAAGGTGCCAAAA
AAGAGTCATATGGGTTAAGGTAAAAGTTTTAGCTAAAAAAGAAACGGGTCGCAAGTCATTCAATATGTATTTAAATGTAGAAGAAACACTCAAATAGTTTCTGTAGACATGCTTCACACA
TTCAAGTATACATAAAATCCATTAGTAGTTAGCTAAAAAAATTGTGTACACCCGTTTTGACCCATGGTAAAATACCCACATTGTTCACTTGATGAAACTTAGTGGTGGCGATTTTTGACA
CGACCGTGGAAACACGACACGGAAGCAATCAGGTTTTGGTTTCTTATATCTTACCAGTTTAATAAATAGGTCATGTGGGTTTACTTGTTTAGCCCATATAATAGTATATAATTCCACACG
AAAAAGGGCAATTACAAAGCAATGGCAGGTAGTCGGGCAACAAGTTGCGCCGCCACCCCCTTTAGTCAAACAGGTCAACTCGTCAACCTATTTAATTAAACAGGTAAACCCCTTTTTTAC
AATCCAACAACCCAGTTAGCACATTTACATCTTAATTTCTACCTGGCAACCCATTATACACTTTTAGATAACTGTATTAAACAGGGCGTGTAGTGTGAGGGTTAGTGTTGATGTTTTTGC
CACAAATATAAGGGTCGTGCGAGGGCTGTACAAGTCTACCCGCCAACCTGACACGATTCACACTTTAATAAAACTGACAGGCGCATTAGCAAAGGAGCTAGGAATAAAGGTGGTCCCTAC
CTTCAAGATACTGAAAGACAGTAAGATTGTAAAAGAAGTTACAGGGGCTAAGTTTGATAATTTAGTTGTGGCAATAGAGGAGGTTAGATCTTCT

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CCCTCGTCTC TCTCACCCAC ACTATACATA CACACTGTGT CTCAATGGCC GTACAGATTC ATCAACTCTG CCGGCCGGTA CCACCACCAC CGTCTACGAC GGCGATCGGC TCACTGCCGT CATGCTTTAC AAAGCAGTCT ACAGTTTCCG GAGACCGTTA CCCGTTTAAA TCTGTGAATA AGAAGAAAGG ACTGAGGTCA TTGGTGACGG TTAGGTCAAG TTTGGAAACC GCGGTGGTTG TCGGTCAGGT GACGGAGGTT AGTCAGGATA CGTTTTGGCC GATTGTGAAT GCAGCCGGTG ATAAGACTGT TGTTCTCGAT ATGTACACTC AGTGGTGCGG TCCTTGCAAG GTCATTGCTC CAAAATTCAA AGAATTGTCT GAGAAGTATC TTGATGTGGT CTTTCTAAAG CTTGATTGCA ATCAGGACAA CAAGGCATTA GCAAAGGAGC TAGGAATAAA GGTGGTCCCT ACCTTCAAGA TACTGAAAGA CAGTAAGATT GTAAAAGAAG TTACAGGGGC TAAGTTTGAT AATTTAGTTG TGGCAATAGA GGAGGTTAGA TCTTCTTGAA GTATACATCT TTGTGTATAA TATTAAATAA ATAATATATA TTTATCTGGC TGTTATTCCA CTTTGATTTC ATTAGAGTTT GTATCCTCTT CTAGAAATAT AAGTATTGTT GTTAGGCCTG TAAATGAACA TTCCGCATTT TTGTGAGCGG AATGTTTGTT TATGTTCGTT TATTTAAAAA CGACAAACAT GTAAAAAAAT TATTGTTCTC TTAATTAAAC AACTGTGTTA CGTGTCAAAT AATACCAAAC AGGGTATGAA TACATCTCCC
CTTTGTTGGT CCTCATTCGG GTCGAGTCAT AGCGAGGTTT GAACTAGATT TTAAAAAACA GCAAAACAAG CTATACGAGT ATTGAAC

Retrieve as FASTA