RedOxiBase: View Perox 13734

Entry information : AtMSD01 (AT3G10920/ATMSD1/MEE33)

Entry ID	13734
Creation	2016-05-24 (Christophe Dunand)
Last sequence changes	2016-06-21 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2016-10-20 (Christophe Dunand)

Peroxidase information: AtMSD01 (AT3G10920/ATMSD1/MEE33)

Name (synonym)

AtMSD01 (AT3G10920/ATMSD1/MEE33)

Class

Mn SOD [Orthogroup: MSD001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtMSD01 start..stop	S start..stop
TsMSD01-1A	441	3e-160	1..229	1..229
ThasMSD01	406	3e-146	1..229	1..231
HaMSD01	389	2e-139	1..229	1..224
HaMSD02	383	2e-137	1..229	1..226

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1..295	295	N° 2	774..820	47	N° 3	901..1026	126	N° 4	1138..1194	57
N° 5	1314..1391	78	N° 6	1475..1567	93
join(1..295,774..820,901..1026,1138..1194,1314..1391,1475..1567)

Literature and cross-references AtMSD01 (AT3G10920/ATMSD1/MEE33)

Cluster/Prediction ref.	Genebank: 820263
Omic ref.	AtProteome: At3g10920 ATTED-II: At3g10920 e-FP Browser: At3g10920 ePlant: At3g10920 TAIR: At3g10920

Protein sequence: AtMSD01 (AT3G10920/ATMSD1/MEE33)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	231
PWM (Da):	25428.15
PI (pH):	8.84

Sequence 273
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAIRCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKENN*

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGATTCGTTGTGTAGCGAGTAGAAAAACCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGATCAGAGGGATTCAGACTTTTACGCTTCCTGATCTTCCTTACGATTAT
GGCGCATTGGAACCGGCCATTAGTGGAGAGATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAG
GGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGGTGTGTTTGTGTGTCTGACTCTCTTTTTTTTTTTTTTTTACGATCTCGATTTCTATGTGTTTGAT
CGATTGGTTTGTGTTTAGATCGTGTTTGGATGATATTAGCAAATGAAGTAGTTGATTTAGGAGAGAAATTTGGTTTGAACAGTGAAGCTGATGAGTAATTTTGATGAATTGGGATGAAAC
TTCTGTAAGAATCAATGAAACTTTTATCGGTAATGCAAGCTTTCTTAGATAGCTACTTTTGTTTGCTGGGTCTTGAGATCATAACCAGTTGATTTAGTATAGAACTTTTGTTAGGAACAT
TGAAGCTGTTGATTAATTTTGATGACTATAGTTTGGTATTAGGATTGTTGCTTCTTGAGCTCCGGACCGGTTGGATTGATAGAAGAGAAATTGGCAGAGAAACTATTGGAAATAAATTGA
GTTTTTTGTGTGCTAGAGAATGGGAATTGATCGACTTTATTTCTAACGTGCAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTGTGAGCTTGTGTTTTGAGTT
TCTGTGTATTTCTTCGATTTTGTTGTTCTGTAATTGATGGTTTGTTTTAATGTATAACAGGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCTCACTTTGGC
TCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGGTCTGTAGTCTAGTTTCACCTTTTTATTTCATCTGCTCACATTGTCGACTCTGG
TGCTTTACGTATAATAACCATGGTCCTTGATTCGCTTGTTTCTGTTGATTAATTCAGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAGGTAACT
TATCCATGATCAGGAATGCGCTATTGAATATGTTCAAAAGATTTCTTGGTACTCATGAACATCTGTGAGAATAATGGGTTTTAAAGAAAAAGAGTTTGTTTCGGTTGGTGCAGGATCCAT
TAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAGGTAACAACACTTTTGATACCTTAAGTCTCATGAGTTAGCTTAAAAGATT
AAGCTCTCTAATCAATCTGTATTCTCTCATTCAGTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAA
CAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA