Entry information : AtMSD01 (AT3G10920/ATMSD1/MEE33)
Entry ID 13734
Creation 2016-05-24 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: AtMSD01 (AT3G10920/ATMSD1/MEE33)
Name (synonym) AtMSD01 (AT3G10920/ATMSD1/MEE33)
Class Mn SOD    [Orthogroup: MSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtMSD01
start..stop
S start..stop
NoffMSD01-1B 447 1.51e-162 1..229 1..229
NoffMSD01-1A 444 4.01e-161 1..229 1..229
TsMSD01-1A 441 3.52e-160 1..229 1..229
ThasMSD01 406 2.63e-146 1..229 1..231
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13734' 'join(1..295,774..820,901..1026,1138..1194,1314..1391,1475..1567)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..295 293 N° 2 774..820 45 N° 3 901..1026 124 N° 4 1138..1194 55
N° 5 1314..1391 76 N° 6 1475..1567 91  
join(1..295,774..820,901..1026,1138..1194,1314..1391,1475..1567)


exon

Literature and cross-references AtMSD01 (AT3G10920/ATMSD1/MEE33)
Cluster/Prediction ref. Genebank:   820263
Omic ref. AtProteome:   At3g10920 ATTED-II:   At3g10920 e-FP Browser:   At3g10920 ePlant:   At3g10920 TAIR:   At3g10920
Protein sequence: AtMSD01 (AT3G10920/ATMSD1/MEE33)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   231
PWM (Da):   %s   25428.15  
PI (pH):   %s   8.84
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAIRCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEP
PKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKENN*

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATTCGTTGTGTAGCGAGTAGAAAAACCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGATCAGAGGGATTCAGACTTTTACGCTTCCTGATCTTCCTTACGATTAT
GGCGCATTGGAACCGGCCATTAGTGGAGAGATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAG
GGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG
AGGTGTGTTTGTGTGTCTGACTCTCTTTTTTTTTTTTTTTTACGATCTCGATTTCTATGTGTTTG
ATCGATTGGTTTGTGTTTAGATCGTGTTTGGATGATATTAGCAAATGAAGTAGTTGATTTAGGAGAGAAATTTGGTTTGAACAGTGAAGCTGATGAGTAATTTTGATGAATTGGGATGAA
ACTTCTGTAAGAATCAATGAAACTTTTATCGGTAATGCAAGCTTTCTTAGATAGCTACTTTTGTTTGCTGGGTCTTGAGATCATAACCAGTTGATTTAGTATAGAACTTTTGTTAGGAAC
ATTGAAGCTGTTGATTAATTTTGATGACTATAGTTTGGTATTAGGATTGTTGCTTCTTGAGCTCCGGACCGGTTGGATTGATAGAAGAGAAATTGGCAGAGAAACTATTGGAAATAAATT
GAGTTTTTTGTGTGCTAGAGAATGGGAATTGATCGACTTTATTTCTAACGTGCAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTGTGTGAGCTTGTGTTTTG
AGTTTCTGTGTATTTCTTCGATTTTGTTGTTCTGTAATTGATGGTTTGTTTTAATGTATAACAGGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCTCACTT
TGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG
TGGTCTGTAGTCTAGTTTCACCTTTTTATTTCATCTGCTCACATTGTCGA
CTCTGGTGCTTTACGTATAATAACCATGGTCCTTGATTCGCTTGTTTCTGTTGATTAATTCAGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAG
AGGTAACTTATCCATGATCAGGAATGCGCTATTGAATATGTTCAAAAGATTTCTTGGTACTCATGAACATCTGTGAGAATAATGGGTTTTAAAGAAAAAGAGTTTGTTTCGGTTGGTGCA
GGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAGAGGTAACAACACTTTTGATACCTTAAGTCTCATGAGTTAGC
TTAAAAGATTAAGCTCTCTAATCAATCTGTATTCTCTCATTCAGTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATG
AGAAGGAAAACAACTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGATTCGTTGTGTAGCGAGTAGAAAAACCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGATCAGAGGGATTCAGACTTTTACGCTTCCTGATCTTCCTTACGATTAT
GGCGCATTGGAACCGGCCATTAGTGGAGAGATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAG
GGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG
GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTGAAGGTGGTGGAGAGCCA
CCAAAAGGATCTCTTGGTAGTGCCATTGACGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTG
TGGCTCGGACTA
GACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAG
GATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTG
CAG
TACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAACAACTGA

Retrieve as FASTA