View Redoxidase 13742

Entry information : HaCSD01 (HanXRQChr07g0190131)

Entry ID	13742
Creation	2016-05-24 (Christophe Dunand)
Last sequence changes	2016-05-24 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2017-11-23 (Catherine Mathe (Scipio))

Peroxidase information: HaCSD01 (HanXRQChr07g0190131)

Name (synonym)

HaCSD01 (HanXRQChr07g0190131)

Class

Cu/Zn SOD [Orthogroup: CSD001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus

Organism

Helianthus annuus (Sunflower) [TaxId: 4232 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	HaCSD01 start..stop	S start..stop
HaCSD02	306	3.16e-107	13..197	32..232
LeCSD01	270	4.83e-94	45..197	1..152
AtrCSD02	265	6.3e-92	44..197	24..176
ThasCSD01	256	1.04e-88	45..197	1..152

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13742' 'join(26571290..26571408,26573261..26573349,26573413..26573517,26573610..26573705,26574460..26574491,26574565..26574640,26574726..26574799)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	26571290..26571408	117	N° 2	26573261..26573349	87	N° 3	26573413..26573517	103	N° 4	26573610..26573705	94
N° 5	26574460..26574491	30	N° 6	26574565..26574640	74	N° 7	26574726..26574799	72
join(26571290..26571408,26573261..26573349,26573413..26573517,26573610..26573705 ,26574460..26574491,26574565..26574640,26574726..26574799)

Literature and cross-references HaCSD01 (HanXRQChr07g0190131)

DNA ref.	HanXRQ genome: HanXRQChr07 (26571290..26574799)

Protein sequence: HaCSD01 (HanXRQChr07g0190131)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	197
PWM (Da):	20480.07
PI (pH):	6.88

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVTFAICMYLYLYINQSACPNFSTTHSHTHTHNLCRGVLRSHTKMVKAVTVLNSSEGVSGTIFFTQEAGAPTTVTGDISGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKEHGAPDDE
IRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGGQSIIGRAVVVHADPDDLGGGHELSKSTGNAGGRVACGIIGLQ

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTGACCTTTGCTATATGTATGTATCTATATCTATATATCAATCAATCGGCGTGCCCTAATTTCTCGACTACTCACTCACACACACACACACACAATCTTTGCAGGGGTGTTCTGAGA
GGTAAAATTGAATCTTTTTTCGCTTTTCTTTGATTCTGATCGTTGTATGTATGTGTATTTGATCTTGTAATCTGTTGTATCGAAATCGAATTTGATTACGATGTGTGTGTTATTCTTATT
TTGTTTGTATCGCTTTTGATTTGATTTAGCTTGATTTTCGTACTTTCGATTATAAATTTATAACCGATTTGATCGAGATCAGTGAATTTTGACTTGGATCATTTCAATCTAGAAGTGGTG
CATGCGTTCATCTAATAGTAAATCTAGACAAAAGTTTAAGTTAGTGATTAGGTAACAATCATGTAATGGAAATCATGTTGTGTTATTGGATGATCGGTTTCTATTAAGTGGAAAACTAGG
TTTTTAAATGTTCTTATGGAGAATTGATTGAAATCAAAGGACAGAGGTTGAAATCTCAAATGGATGGGGACTTGTGTTTTTGTTTACAAGTGTTGCTGTAGAGAAAATTTGAGTTTATGT
TTTAAGTAGGGCTGGTCAAAAAGCTCGCGTCTCTGAGCTTGCTCGGAAAAGGCTCGCTCGATATGGCTCGGTTTGAAAGTGAGCCTAGCTCGGCTCGTGATGAGCCAAATTGGCTCGGTT
TGGCTCACTTGGTAGCTCGGCTCGGCTTAGCTCGAATTTTTTTTACTTATATTATATTTTATTTTTATATACATATAATATATTAAAAAATAGTGATTATTAATTACATTTAGTTAGGCT
TGTAGTTTGATATCTATGACATATTTAAAGGTTGATTTTCGTGCTAATGAACAAATATTGTATTTAAGTGAAATATAGAACATATTTTGCGTTATTGAACGTGATTTTGGCTTGTAATTT
ATTAGGTTGAACTTATTTTGAATATGTTCTTTTGAAGTATTGAATAATATTTTAGAATACTAAATTTTGAGAGCTATGTATTATTTTTTTTTAAAATCGAGCCAAACCAAGCCGAGCCGA
GCCAGCTCGGTTTAAAACCAAGCCGAGCCCGAGCTTAGATTTTTAGCTCGGTTTCAAATCCGAGCTGAGCCGAGCCAGCTCGGTTTATAATCGAGCCGAGCCCGAGCTTGCCCTAGCTTG
GCTCGGCTCAGCTCATGAACAGCCCTAGTTTTAAGGAAAGGAATAGGTGTCAAGAATATATAGATATACTGTTCTGTCTCTCTTCTGTTTGAATGATTTTGCATTACTGTCTTGATATAT
ATATGTATATGCCATTTTCGGATACAAATCATTAGTCAAAATTCATTTACGTATCATATGATGACTTGATCTAGATCGTTTCTCTATATAATCGATCATAACCGAAAGTATGACGATCAA
GCTTAGTCAAAGTGAATGTTTATTTTTTAAATGGTTATTTTCTTCTTGTGGTTTTAGTTGCCTAAGCATATTAGTTAACATGCTTTTTGAGGGTTAGTAAGTTATGGGGCTTTGTGCTGA
AATAGGCTAATGTAAGTAGAAGAACAAAGGGATTTTGTTATATATTACATGCACATAATCACATTTGTAAGTTGATTACTATATCGCCATCTTGTTTAGGGTGTGTGAGACAAAGCAGAT
GCTCATAGCCTTATTATATCCGCTCAATTAAACTTGCCTGCATGGCTGCATCCATTCCCAATAGTGAAAAGTTATGTTTGTAATTGTAAATCATATACAATTTAGATTTATTTGTTACCT
GGATACTTAATTCTTGCAAAGCTCCGTTAGGTTGGTGGTGTCGAATCAAACATTTAAGTCAATCATCAAAGAGTCTAAACCTAAATATTGTAAATTGATATCAAAATCATCGGTCGGAGA
GTTATATGCGCTTCATGGATAATATCTGCTTATTCATTTTATCACTTGTTTAGATCACATACAAAAATGGTGAAGGCAGTCACAGTTCTTAACAGCAGTGAAGGTGTTAGTGGCACCATT
TTCTTCACTCAAGAGGCAGAAGAGGTAGTTATTTACGTATTGAAGTTTGATAAACAGTTTAAGTATCTTACTTGATTGACGTTGCAGGTGCTCCCACAACTGTTACTGGTGACATTTCTG
GCCTTAAACCCGGACCACATGGTTTCCATGTTCATGCGCTTGGTGACACAACCAATGGATGCATGTCAACCGCGGTATGTGTTCCTCACTAAAATTGTTAAAGTTGAGTCATTTGTGCTT
AATGTTGACATATCCAAACATTTAAACCTTTTCTTTCTGATGATAGGTCCTCACTACAATCCTCATGGAAAGGAGCATGGTGCCCCTGATGACGAGATTCGCCATGCTGGCGATCTTGGC
AATGTCACAGTAGGCGAAGATGTGGTATGCTTTATGTTTCAAGAATTAGCATTATGATCTTTGCCTCTGCAAGCTTTATACAAGATCGGTTTTCAAAATCTAATACAAATCAACTTTGCT
TTGTTATTTTTCGCTAGTTTATTGCTTTCAGCAATGTTTTCACCATCATATCTCTTCGTTAAATCATGGTCAATATGTGTGAAATTTTTTTCAGGATAATTTCATACCTTGCTCTTGGGG
TACAAATGTACAATATTATATTTGCTCAACAAAACAAATCATAATATCTGTTATCAAGTATGCCTGTTTTTTAAACTCTGAGATTTACACCCTTAGCTAATATTCATTAGGATATTAGCT
TTTGGAATGCAAGGAAAAACAGAAGGGTATAATGGTCATATTATGAATTTTATATAATGAATTAGATTAATACGGATTTTTAAGCATTTGGGATGTCGGATATTTAGTAATAATTTTTTT
AATTTAAAAACGTTTGATACTATGCAAGTATTTATATGAATGTATATGAAATTACCCCTTTTTTCTTGCTTTCACCTTATCCATGAGCTTCGATTCAATTTAAAATTAAGGGGAGTCAAA
ATTTCTAATGACAGTTCTGTATAATAAGTTATGGCTCTATTTGTATTTGCTTTGCTAATGACAAAATTACGCAAATTTTATTTGAACTTTCAAAGACTATGAATGGAGAGTGAGAAAAAT
GTGAGCTCTGTAACTAATACCTACTACTAACTTCTTATGGCTTTCTCATTGAACTCAGGTACTGCAAAGTTCACCATTGTTGATAAGCAGAGGTTGGTTCCTTTTTGAAATTGAAGTTTG
ATACATGTTTAAGCATGCCAATTTAAGACGTAAAAATTCATGCAGATTCCACTAATTGGAGGTCAATCCATCATTGGAAGAGCTGTGGTTGTCCATGCTGATCCTGATGATCTTGGAAAG
GGGGTAAACTTGAGTTTTTTTAGTATCAAAACACATAGACATCCTTGCGGACACGTATCATAGATGTGAAGTTGTTTTAATCTTGCAGGAGGGCATGAGCTAAGCAAAAGCACTGGAAAT
GCTGGTGGAAGAGTTGCATGTGGTATCATTGGATTGCAGGGT

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTGACCTTTGCTATATGTATGTATCTATATCTATATATCAATCAATCGGCGTGCCCTAATTTCTCGACTACTCACTCACACACACACACACACAATCTTTGCAGGGGTGTTCTGAGA
TCACATACAAAAATGGTGAAGGCAGTCACAGTTCTTAACAGCAGTGAAGGTGTTAGTGGCACCATTTTCTTCACTCAAGAGGCAGAAGGTGCTCCCACAACTGTTACTGGTGACATTTCT
GGCCTTAAACCCGGACCACATGGTTTCCATGTTCATGCGCTTGGTGACACAACCAATGGATGCATGTCAACCGGTCCTCACTACAATCCTCATGGAAAGGAGCATGGTGCCCCTGATGAC
GAGATTCGCCATGCTGGCGATCTTGGCAATGTCACAGTAGGCGAAGATGGTACTGCAAAGTTCACCATTGTTGATAAGCAGATTCCACTAATTGGAGGTCAATCCATCATTGGAAGAGCT
GTGGTTGTCCATGCTGATCCTGATGATCTTGGAAAGGGAGGGCATGAGCTAAGCAAAAGCACTGGAAATGCTGGTGGAAGAGTTGCATGTGGTATCATTGGATTGCAGGGT

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GTCTCTACGT ACTTTACACG CACCAATAAT AGTACGCGTC TAACATAAAC TCGCGCGTGT CCTGATGGGG TTAGGTAGTA GACTTTCAGG TCGGTCTTAA ATGGTGACCT TTGCTATATG TATGTATCTA TATCTATATA TCAATCAATC GGCGTGCCCT AATTTCTCGA CTACTCACTC ACACACACAC ACACACAATC TTTGCAGGGG TGTTCTGAGA TCACATACAA AAATGGTGAA GGCAGTCACA GTTCTTAACA GCAGTGAAGG TGTTAGTGGC ACCATTTTCT TCACTCAAGA GGCAGAAGGT GCTCCCACAA CTGTTACTGG TGACATTTCT GGCCTTAAAC CCGGACCACA TGGTTTCCAT GTTCATGCGC TTGGTGACAC AACCAATGGA TGCATGTCAA CCGGTCCTCA CTACAATCCT CATGGAAAGG AGCATGGTGC CCCTGATGAC GAGATTCGCC ATGCTGGCGA TCTTGGCAAT GTCACAGTAG GCGAAGATGG TACTGCAAAG TTCACCATTG TTGATAAGCA GATTCCACTA ATTGGAGGTC AATCCATCAT TGGAAGAGCT GTGGTTGTCC ATGCTGATCC TGATGATCTT GGAAAGGGAG GGCATGAGCT AAGCAAAAGC ACTGGAAATG CTGGTGGAAG AGTTGCATGT GGTATCATTG GATTGCAGGG TTGATTATGC CAAATGGAAT CTGTGGTTTA TGTTGGTCAA TAAAAGTAGT CTTGATGCTG CTTGATTATG TTTTGAGTGT ATGTTTTTTT TTTTAAAAAA AAGCTATGTT TGGCTCTTGA CATGAACACT TATTTTTAGA AAAATGGGTT GCGTGTTTGT TTGAGAACTA TGTGAGTTTT TTATCTTGAC TTCTTTTATT AGGTAACGGG TAAAAAGTGG CACAAGTGTT TGTATGTGTA TACACAATTA TATATGTGTG TTTACCATAG TGGCCCCGGA TATAACCCAA AAAATTAGGG GTGTCCCTAA AAAAATTGGT TAGTGTCTCA GCAAGTCAGT AATCAGTTTT TCCGGGAGTC ATTGGCCGCT TATTACTTGT ATAAATGTGG
GCTTATTACT ATTAATTAAA TAATTATATA GATGTTAGTT AGATAGTTAA

Retrieve as FASTA