Entry information : HaMSD01 (HanXRQChr14g0460121)
Entry ID 13749
Creation 2016-05-24 (Christophe Dunand)
Last sequence changes 2016-05-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaMSD01 (HanXRQChr14g0460121)
Name (synonym) HaMSD01 (HanXRQChr14g0460121)
Class Mn SOD    [Orthogroup: MSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaMSD01
start..stop
S start..stop
HaMSD02 432 1.49e-156 1..226 1..228
ThasMSD01 403 2.84e-145 1..226 14..233
TsMSD01-1A 392 7.17e-141 1..225 1..230
LeMSD01 390 2.75e-140 1..226 1..228
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13749' 'join(168477405..168477684,168478863..168478909,168478986..168479111,168479221..168479277,168479392..168479469,168480017..168480106)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 168477405..168477684 278 N° 2 168478863..168478909 45 N° 3 168478986..168479111 124 N° 4 168479221..168479277 55
N° 5 168479392..168479469 76 N° 6 168480017..168480106 88  
join(168477405..168477684,168478863..168478909,168478986..168479111,168479221..1 68479277,168479392..168479469,168480017..168480106)


exon

Literature and cross-references HaMSD01 (HanXRQChr14g0460121)
DNA ref. HanXRQ genome:   HanXRQChr14 (168477405..168480106)
Protein sequence: HaMSD01 (HanXRQChr14g0460121)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   226
PWM (Da):   %s   25189.97  
PI (pH):   %s   8.69
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALRALTNVKTLGRLRHQQIRGLQTFTLPDLSYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLDDAIAKGDASTAVKLQSAIKFNGGGHVNHSIFWKNLAPTEGGGEPPHGSLG
WAIDQHFGSMEKLVAKMNAEGAAVQGSGWV
WLAVDKELKRLVVETTANQDPLVTKGASLVPLVGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKECP

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCACTTCGAGCTCTCACCAATGTCAAAACCCTAGGTCGGTTACGTCACCAACAGATTCGCGGACTGCAGACGTTTACGCTTCCTGATCTTTCCTACGATTATGGCGCACTGGAGCCG
GCGATTAGCGGCGAGATTATGCAGCTCCATCATCAAAAACACCACCAGACCTACATCACTAACTACAACAAAGCTCTCGAGCAGCTTGATGATGCCATCGCTAAAGGAGATGCATCTACC
GCCGTTAAATTGCAGAGCGCCATTAAGTTCAACGGCGGAG
AGGTTCGATTTTATAGTTTTTGTATTAATGTTTATCTAATTATGTTGTTTCGATACGTTTAGTTGTATATTTTGTTAGTA
ATTATAGTTGAATACATGCTAGAAGGACCTTTGTGTTGTTAAACTTGCAATATAATCGATATTAGTGGTAAGTAGATTTGACATCATGTGGTTTGAATCCATATGTGACTGCTATTGCTT
AACAATTAAGTAATTAACTTTTATCATCAGGAATATTGACTTTGGGATGGTTAATTGACATGCATATTAGAAGATGTTATTACTTAAAAGTTTTGTGGTTTCAAAGAAGTTTATAGTGAC
GCGATAATTATCCGTAGGAGATTCGGTTAGATTGGAGCAAGTGTGTGATCATGATGGTTTTGTGTGTGAATAAGTTGCGTTTGATTTTTGCAAGCTCTATAAATAGGTGTGATAAAGCTC
ATAGCGATACGTAGGGCTGGCAATTTTGACACGAACATGACACGAACCTACACGAAGTTAATAGGTTTCGTGTTTAACCTTAACAGGTTTCGTGTCTATAACAGGTCGACATGATAAGAC
CTGTTTAATTTCGTGTCGTGTTCGTGTTTACCTAATTCGTGTTCGTGTCTTATCGTGTTCGTGTCTTAATAGGTCGTGTTTGTGTCTTAACAGGTCATGTCAGCCACGATATGACCTGTT
AAAATTTAAGACCATTATGCAGGTCGTGTTTATGTCTTAACATGTTGTGTTCGTGTCTTAACAGGTTGTATGATACGTTGGTAATTTTTTAGTGTATTAACAGGTCGTTTCGTGTAACAT
GTTTATTATTAGGCTCGTGTTTGTGTTTATAAAATCTGGCACGATAAGATTTCGTGTCGTGTTCGTGTTTACCTGTTTTGGGTTCATGTCTTATCATGTTCAGGTCTTAACAGGTCGGGT
TGACACGATATGCCAGCCCTACTCATATGAACATCTTGAGATTTATTGTTGCTGACACAGTGCCACTTCTTATAGTTTGTGTATTAAGTTAATGTAATGATGGTTGCAATAGTTATGCTA
TTCACTGGTTGTTCAATCTCTTAACACGATAGATAGTTCAATACTTTTCTATTAGCTGGCTGTACTAGATTCTAACTAGTAACTAGAATTAAATTCATATACATACAGTATTCTTTTTTT
AATTTTTTTTCTTATACCAGGTCATGTGAATCACTCAATTTTCTGGAAGAATCTTGCCCCTACTCGTGTGTAAGTCTGTTTTCTGATAATCCAATGATGATTCTGAGCATAACACTTGAC
TGAAAGATGATGTCTTTTTATGCAGGAAGGGGGTGGTGAGCCGCCACATGGTTCGTTGGGGTGGGCCATTGACCAGCACTTTGGTTCTATGGAAAAATTGGTTGCCAAGATGAATGCCGA
AGGTGCTGCTGTTCAAGGCTCTGGATGGGTG
TGGTATGTTATACTGTCTCGTCTATAATTCGTATCATTCATCATTTTCAATTTTTATCGTTCATTCTGTTCTTGAACTCTGGTTTAATA
TACATGTTTGCGATATTCTTAGTGGCTTGCAGTGGATAAGGAGCTGAAAAGGCTCGTAGTTGAAACAACTGCAAACCAGAGGTATGCATTGCTAGTTTTGTTCTTAGACTCTTTGCGGTT
TGCACTAAATAAAGATTTCTCATGCATTTACAAGACGCTTAATATGTTAATAAATATCCATCGTGTCCGCTGCAGGACCCTCTGGTTACAAAAGGTGCAAGTTTGGTCCCACTAGTTGGC
ATAGATGTCTGGGAGCATGCATACTACTTACAG
AGGTAATCACATAAGCTTTTATTTAGAGTAAATTACAAAAATTGTCCTTTATGTATATCACTTATTGCAAATTGTGTCCTTTGTCTT
CAATAATTACAGAAAACGTACTCGATGTTTGCAAACTCTTGCAAGTTATGTCCTTTAGCCCTAACTCAGTTAATTTTTGTTGTTAAATCTGACCAAATGGACCCCACATGACGATATTAT
TTATGGTTAAATCTGACCAAATGGACCCCACGTGAGAGTAAAATGACCAAAATACCCTCATGTGGGGTCCATTTGGTCAAATTTAACCACAAAAATTAACTGAGTTAGGGCCAAAGAACA
TAACTTGCAAGGGTTTGTAAACATCGAGTACGTTTTCTGTAATTATTGAAGACAAAGGACACAGTTTGCAATAAGTGACATACATAAATGACGATTTTTGTAATTTACTCCTTTTATTTA
TGCCGGTAGCAGGTTTATGATCCACACAAACAGAAAGTTTTAAAACCCAAATTAATGATCGTCGTATTTACGTTTGATTGTTTTTTCTACACGTGAATACAGTACAAGAATGTTAGACCG
GATTATCTGAAGAACATTTGGAAAGTGATCAACTGGAAGTATGCAAGTGAAGTGTATGAGAAAGAATGTCCT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCACTTCGAGCTCTCACCAATGTCAAAACCCTAGGTCGGTTACGTCACCAACAGATTCGCGGACTGCAGACGTTTACGCTTCCTGATCTTTCCTACGATTATGGCGCACTGGAGCCG
GCGATTAGCGGCGAGATTATGCAGCTCCATCATCAAAAACACCACCAGACCTACATCACTAACTACAACAAAGCTCTCGAGCAGCTTGATGATGCCATCGCTAAAGGAGATGCATCTACC
GCCGTTAAATTGCAGAGCGCCATTAAGTTCAACGGCGGAG
GTCATGTGAATCACTCAATTTTCTGGAAGAATCTTGCCCCTACTCGTGAAGGGGGTGGTGAGCCGCCACATGGTTCGTTG
GGGTGGGCCATTGACCAGCACTTTGGTTCTATGGAAAAATTGGTTGCCAAGATGAATGCCGAAGGTGCTGCTGTTCAAGGCTCTGGATGGGTG
TGGCTTGCAGTGGATAAGGAGCTGAAA
AGGCTCGTAGTTGAAACAACTGCAAACCAG
GACCCTCTGGTTACAAAAGGTGCAAGTTTGGTCCCACTAGTTGGCATAGATGTCTGGGAGCATGCATACTACTTACAGTACAAGAATGTT
AGACCGGATTATCTGAAGAACATTTGGAAAGTGATCAACTGGAAGTATGCAAGTGAAGTGTATGAGAAAGAATGTCCT

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGGAAGTAAG AAAAATAGTG TGCCTGTTTT GTGATAAAGC ACACAGGTAA GGATACATTT ACCTGGTTCT AAAACGCACA CAGATCCCAT TTGGCTTACT TATCTCTCCA TTTTTGTCTG  TCAATTGATT CGCACAACAA CAAATGGCAC TTCGAGCTCT CACCAATGTC AAAACCCTAG GTCGGTTACG TCACCAACAG ATTCGCGGAC TGCAGACGTT TACGCTTCCT GATCTTTCCT  ACGATTATGG CGCACTGGAG CCGGCGATTA GCGGCGAGAT TATGCAGCTC CATCATCAAA AACACCACCA GACCTACATC ACTAACTACA ACAAAGCTCT CGAGCAGCTT GATGATGCCA  TCGCTAAAGG AGATGCATCT ACCGCCGTTA AATTGCAGAG CGCCATTAAG TTCAACGGCG GAGGTCATGT GAATCACTCA ATTTTCTGGA AGAATCTTGC CCCTACTCGT GAAGGGGGTG  GTGAGCCGCC ACATGGTTCG TTGGGGTGGG CCATTGACCA GCACTTTGGT TCTATGGAAA AATTGGTTGC CAAGATGAAT GCCGAAGGTG CTGCTGTTCA AGGCTCTGGA TGGGTGTGGC  TTGCAGTGGA TAAGGAGCTG AAAAGGCTCG TAGTTGAAAC AACTGCAAAC CAGGACCCTC TGGTTACAAA AGGTGCAAGT TTGGTCCCAC TAGTTGGCAT AGATGTCTGG GAGCATGCAT  ACTACTTACA GTACAAGAAT GTTAGACCGG ATTATCTGAA GAACATTTGG AAAGTGATCA ACTGGAAGTA TGCAAGTGAA GTGTATGAGA AAGAATGTCC TTAAAACGAC GGATATTGAC  ATGACACCTA CCCGCAACAT TCGGTGTTAT GGCTCTTCAA AAGTTTGGAC ATGATGTAAT AAGGAAAGCC CCATTTTGCC CTGGGGATTA ACCCTTGTGT ATGCAAAACA TGAATAAGCT  TACATGTCAT TTTGCTTTTC GGTTATTCAC CGTTTGTAAT CGCAACTTCC TCTTTTGCTG CCTAACTATT TGTGTTGATA CTTGATATTT GATCGCGAGA TTTTTGTCGC TTAATCCTTT  CTTTTTAGCA CTATAGTTAT GCAGAAAGTA TTTAAGGTTG TATGGTTGCT CAGAACAAAC ACCTGGAGAA TAGGATGTCT CTATGTGCTA CGACTATGAC TGTTCAAATA GCACGTGGCT 
CGAAACACGC TCAAAACCG 

Retrieve as FASTA