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Entry information : CbraCSD01 (g3018/CHBRA114g00060)
Entry ID 13792
Creation 2016-06-21 (Christophe Dunand)
Last sequence changes 2016-06-21 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: CbraCSD01 (g3018/CHBRA114g00060)
Name (synonym) CbraCSD01 (g3018/CHBRA114g00060)
Class Cu/Zn SOD    [Orthogroup: CSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraCSD01
start..stop		 S start..stop
ThasCSD01-1 230 5.79e-79 1..146 1..146
ThasCSD01 227 1.02e-77 1..146 1..146
AtrCSD02 225 1.29e-76 1..146 25..170
LeCSD01 222 5.52e-76 1..146 1..146
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 166526..166601 74 N° 2 170896..170997 100 N° 3 172799..172894 94 N° 4 174345..174376 30
N° 5 175441..175516 74 N° 6 176887..176980 92 N° 7 177670..177679 8  
join(166526..166601,170896..170997,172799..172894,174345..174376,175441..175516, 176887..176980,177670..177679)


exon

Literature and cross-references CbraCSD01 (g3018/CHBRA114g00060)
Protein sequence: CbraCSD01 (g3018/CHBRA114g00060)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   161 (305)
PWM (Da):   %s   16510.16 (33984.0)  
PI (pH):   %s   5.95 (6.17) Peptide Signal:   %s   cut: 30 range:30-334
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVKAVALLSG TENVKGVIYF SQEGDGPTHV TGKVSGLKPG LHGFHIHQHG DTTSGCMSTG PHFNPSGKTH GAPVDEERHA GDLGNAVASE DGVAEIDLTD SQIPLTGVNS ILGRAVVVHA 
DPDDLGKGGH ELSKTTGNAG GRLACGEFMF LLLEFTAPKS G* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns).
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTGAAGG CCGTGGCATT GCTCTCTGGC ACTGAGAACG TGAAGGGAGT TATCTACTTC AGCCAAGAAG GCGATGGGCC CACGCATGTT ACTGGGAAGG TATCGGGTCT AAAGCCCGGT  CTGCACGGAT TCCACATCCA TCAGCATGGA GACACAACGA GCGGCTGCAT GTCAACAGGT CCTCACTTCA ACCCCAGTGG AAAGACACAT GGGGCGCCAG TCGATGAAGA ACGTCACGCC  GGTGATTTGG GTAATGCCGT TGCATCCGAG GATGGGGTGG CGGAGATCGA TCTCACAGAT TCGCAGATCC CTCTGACTGG AGTTAACTCT ATCCTTGGTA GGGCCGTCGT CGTGCATGCA  GATCCTGATG ATCTGGGAAA GGGTGGCCAC GAGTTGAGCA AGACGACAGG GAATGCCGGT GGTCGGCTCG CGTGCGGTGA GTTTATGTTC CTCTTGCTTG AATTCACAGC CCCTAAGTCT 
GGATGA 

Retrieve as FASTA