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Entry information : PpaCSD02 (Pp3c24_4100/ Cu/ZnSOD)
Entry ID 13915
Creation 2016-10-14 (Christophe Dunand)
Last sequence changes 2016-10-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: PpaCSD02 (Pp3c24_4100/ Cu/ZnSOD)
Name (synonym) PpaCSD02 (Pp3c24_4100/ Cu/ZnSOD)
Class Cu/Zn SOD    [Orthogroup: CSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaCSD02
start..stop		 S start..stop
PpaCSD01 270 3.07e-94 1..158 42..199
LeCSD01 225 4.31e-77 4..154 2..151
AtrCSD02 224 1.8e-76 4..154 26..175
ThasCSD01-1 221 8.49e-76 4..154 2..151
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 406957..407041 83 N° 2 406445..406546 100 N° 3 406231..406326 94 N° 4 405945..405976 30
N° 5 405720..405795 74 N° 6 405529..405582 52 N° 7 405336..405364 27  
complement(join(405336..405364,405529..405582,405720..405795,405945..405976,4062 31..406326,406445..406546,406957..407041))


exon

Literature and cross-references PpaCSD02 (Pp3c24_4100/ Cu/ZnSOD)
Cluster/Prediction ref. Genebank:   5918827
Protein sequence: PpaCSD02 (Pp3c24_4100/ Cu/ZnSOD)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   157
PWM (Da):   %s   15639.91  
PI (pH):   %s   6.41
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPLKAICVLAGPSDSVTGVISFVQDGAGPTIVEGTVKGLNPGKHGFHVHALGDTTNGCMSTGPHFNPKGLEHGAPEDEVRHAGDLGNVIAGEDGIAKVSLKDAHIPLGGPNSIIGRAVV
VHADPDDLGKGGHELSKSTGNAGARIACGIIGFQASA*

Retrieve as FASTA  
Remarks (Chromo 24, 5 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCTCTGAAGGCTATCTGCGTGCTCGCTGGCCCCTCCGACAGCGTTACCGGCGTCATCTCCTTTGTACAAGACGGAGCTGGTATGTATGGCTGCCAGGGTTTCGGGTTAGCATTA
TGCCTCGCGAAAAGTGATACTTGTGGAACAGAGGGGGATTGACTTTTTAAATCTCTCACTTGATCTTGTTTGTAAAAGATGAGGTTTAGCTGCGATAGAAGTGGATGACTGTGATTAGCT
GTAGCATATGACATTAGTGTGTGACTAGTGAGAGTGTTTCTTTATTGAATTCCGAAGGTCCTCACTGACACACTGGTAATTGACAGGAATAGGATATTGGCGCGTATAGTTCAAATTATT
CCTTATACCTTTATCCCCATGATATGGATAGGTTAGAATTAGTACTTGACATAGATACGCTTGCGTTTGATGTGACTGTCTAAGAAGAGATTTCTAGCTCATCTTTACGTATCTTAGCTT
CTGATGTCTGGACAGGCGCCCGACGATTGTGGAGGGAACAGTGAAGGGGTTGAACCCTGGCAAACATGGATTTCATGTCCATGCACTAGGGGACACAACCAATGGCTGCATGTCTACTGG
TACTACACTCATTGTGGCAATCTTGCTAGGGTATGATTACTTTATCGTTGGATGTCGGCAACTATGGTTATGCTCTTCCTGAATTTGCCTTTTAAGTTCTTTTCTCGGTTAAATCAGGTG
TCCTCATTTCAACCCCAAGGGTCTAGAGCATGGTGCCCCCGAGGATGAAGTTCGTCATGCGGGAGACTTGGGTAACGTCATCGCCGGCGAAGATGGTACCCAAGTTTTACACCTTTGGCT
GTAGTGCTATGGTTAGGGACAAGCTGGCGTCGACTTGCCCGAGTTATAGTTTGCAGCTTCCTTGATGTAGCTGGTGTAATTATGAATTCTCTCTCCTTCATGCTCTTTAATTCGGTTCTG
TTTAGAGATTATCAACTCTTTTGCGTCTCTATACTGTCCATTTGTTCTTGAAAGCGGAGGACTGAACTTCACGTGTTGAACTCCATTTGGATTTCTGGGATGTTTGCAGGCGCATTGCCA
AGGTTTCCCTGAAAGATGCTCATGTACTACTTCCGCAACACTACACTTTTCTTTTTAATTGGCTATCATGATCAGCTTGTTAACCAGGGTTTAGCATTTTTGTTTCTTAAAGATTAAATG
ATTTCAGTATGCATTGATTTCTATAATTTCACTCCGCAATTATTCTGTGTAGATATTCCTTTGGGTGGTCCAAACTCAATTATCGGTCGCGCAGTGGTTGTTCATGCTGATCCTGATGAC
CTCGGAAAAGGTGAGTTGGAAGCAGGGTTAGGGTTTTTACCTCAGAGGCTCAATCTGAAAGCCTCTTTTCTATTGATTTACTGAGAGTATCATTTTAGCGTGTGGCGTTTGTACCGTTGC
TCACTTGTTTTGTTCAATGACTTGTAGGTGTGGACACGAGCTAAGCAAGTCTACTGGAAATGCCGGTGCCCGCATTGCGTGTGGTCTGTATTCAAAAACACTGATATTTTAGTGGCTTGT
AGAACTCTGAAATTTCACATTTGTAGTAGATTTGAGAACCACTTGGATAGGTTCATGCATCGTGTTGTCCTTCGTGGCAAACCCTGTAGATGATGTACTTCTAAAAATCTCTTTTGAATT
ATTGCAGGAGAATTATTGGATTTCAGGCTTCAGCTTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCTCTGAAGGCTATCTGCGTGCTCGCTGGCCCCTCCGACAGCGTTACCGGCGTCATCTCCTTTGTACAAGACGGAGCTGGCCCGACGATTGTGGAGGGAACAGTGAAGGGGTTG
AACCCTGGCAAACATGGATTTCATGTCCATGCACTAGGGGACACAACCAATGGCTGCATGTCTACTGGTCCTCATTTCAACCCCAAGGGTCTAGAGCATGGTGCCCCCGAGGATGAAGTT
CGTCATGCGGGAGACTTGGGTAACGTCATCGCCGGCGAAGATGGCATTGCCAAGGTTTCCCTGAAAGATGCTCATATTCCTTTGGGTGGTCCAAACTCAATTATCGGTCGCGCAGTGGTT
GTTCATGCTGATCCTGATGACCTCGGAAAAGGTGGACACGAGCTAAGCAAGTCTACTGGAAATGCCGGTGCCCGCATTGCGTGTGGAATTATTGGATTTCAGGCTTCAGCTTGA

Retrieve as FASTA