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Entry information : AtTrxF01(AT3G02730/ATF1)
Entry ID 14206
Creation 2016-10-27 (Christophe Dunand)
Last sequence changes 2016-11-07 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-01-30 (Christophe Dunand)
Peroxidase information: AtTrxF01(AT3G02730/ATF1)
Name AtTrxF01(AT3G02730/ATF1)
Class Thioredoxin Type F    [Orthogroup: TrxF001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtTrxF01
start..stop		 S start..stop
AtTrxF02 281 1.58e-98 1..175 1..185
ThasTrxF01 255 3.76e-88 1..175 1..180
ThasTrxF02 246 1.62e-84 1..175 1..179
HaTrxF01 199 4.01e-66 16..175 16..174
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 103..395 291 N° 2 706..805 98 N° 3 981..1124 142  
join(103..395,706..805,981..1124)


exon

Literature and cross-references AtTrxF01(AT3G02730/ATF1)
Cluster/Prediction ref. Genebank:   821260
Omic ref. AtProteome:   At3g02730 ATTED-II:   At3g02730 e-FP Browser:   At3g02730 ePlant:   At3g02730 TAIR:   At3g02730
Protein sequence: AtTrxF01(AT3G02730/ATF1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   178 (302)
PWM (Da):   %s   19256.1 (33112.0) Transmb domain:   %s   i107-129o170-189i
PI (pH):   %s   9.25 (9.32) Peptide Signal:   %s   cut: 20 range:20-321
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPLSLRLSPSPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSL
DSRKRGDSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAASG*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 2 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTCTTTCTCTCCGTCTTTCTCCTTCGCCGACGGCTTTATCTCCGACTACCGGAGGATTTGGTCCATCGAGGAAACAGTGCCGGATTCCTTACTCCGGCGTCCCGACGACGAAGATT
GGTTTCTGTTCTTTGGATTCTAGGAAAAGAGGAGATTCCTCTGTTGTTAGGTGTAGCTTAGAAACCGTTAATGTCAGTGTTGGTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCC
ATCGTTAAAGCCGCCGGTGAAAAGCTTGTCGTACTTGACATGTACACTCAATGTGGTACCTACTATCTCTTCTATGCCTCTCTCTGCTTTGAAATTTTTACCATTCGACATCTCTGATTG
TATATAGCGGAATCGATGAAATCAATGGCGTTGCGATGTCGAATGCTTAGATTACCAATTGATTTGAATTTTGATACTAATCAAAGTTTCCGTGGCTTTCAACTAAGATTGAAAAATCTT
CTCAGTTAGATTCTTCTGCAGATGTGGTTCATTTAGATTCCATAGTGAATGTTTTGGTTTTGATGTTGGTAGTCTTTAAAGAGAGTTTCAATTCAAGATGTTCTATTCTTGGATACCTTA
TGCAGGTGTGGTCCATGTAAAGTGATTGCCCCTAAATACAAAGCTTTATCAGAGAAGTACGACGACGTTGTGTTTCTAAAGCTTGACTGCAATCCAGATAACCGGGGGTCTGAGTTCTGC
TCTTTTATCTCTCTTCTTTTGGTAACTCGGTTTTCCTAAACCATATATCAATTGAACCATAGCTAGTAGCAGCTAAGGATAATCAATACCTGTTTTTGTTGTTGCTACTACTACCTGTCT
TTGTTGTTGCTGCTAAGCCATTGAAACTCTTCATTGGTGCAGCCATTGGCAAAAGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATTTTGAAGGATAACAAGGTTGTCAAGGAAGTG
ACCGGTGCAAAATACGATGATCTGGTTGCAGCGATTGAAACAGCGAGGTCTGCTGCTTCCGGATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCTCTTTCTCTCCGTCTTTCTCCTTCGCCGACGGCTTTATCTCCGACTACCGGAGGATTTGGTCCATCGAGGAAACAGTGCCGGATTCCTTACTCCGGCGTCCCGACGACGAAGATT
GGTTTCTGTTCTTTGGATTCTAGGAAAAGAGGAGATTCCTCTGTTGTTAGGTGTAGCTTAGAAACCGTTAATGTCAGTGTTGGTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCC
ATCGTTAAAGCCGCCGGTGAAAAGCTTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCCCCTAAATACAAAGCTTTATCAGAGAAGTACGACGACGTTGTG
TTTCTAAAGCTTGACTGCAATCCAGATAACCGGCCATTGGCAAAAGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATTTTGAAGGATAACAAGGTTGTCAAGGAAGTGACCGGTGCA
AAATACGATGATCTGGTTGCAGCGATTGAAACAGCGAGGTCTGCTGCTTCCGGATGA

Retrieve as FASTA