Entry information : CbraTDX01 (g30929/CHBRA371g00080)
Entry ID 14209
Creation 2016-10-27 (Christophe Dunand)
Last sequence changes 2016-11-04 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-11-04 (Christophe Dunand)
Peroxidase information: CbraTDX01 (g30929/CHBRA371g00080)
Name (synonym) CbraTDX01 (g30929/CHBRA371g00080)
Class Thioredoxin Type TDX    [Orthogroup: TDX001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraTDX01
start..stop
S start..stop
KflTDX02 103 2e-26 98..177 415..494
HaTDX01 100 8e-26 57..181 226..363
KflTrxH02 94 2e-25 88..177 21..110
KflTrxH03 90 4e-24 88..177 18..107
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 157459..157747 289 N° 2 166952..167058 107 N° 3 168046..168195 150  
join(157459..157747,166952..167058,168046..168195)


exon

Literature and cross-references CbraTDX01 (g30929/CHBRA371g00080)
Protein sequence: CbraTDX01 (g30929/CHBRA371g00080)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   182
PWM (Da):   %s   20434.7  
PI (pH):   %s   9.99
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSECRVVPASRPLRYHVPRTAGWCVACALLAYSPWLRPLTSKCRKRMLLGSDNRKKRKNKATRRKQHIVKPLQEATELVEAEHMALGESLTIEDSHCLTVAWFTATWCGPCRQITPVVTKLNNDYPLVKFLKIDVDENQDLALSEGIQSVPTFRFIKAGRQVSEIKGANALSLEATVKMWA*

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCAGAATGCCGCGTAGTGCCTGCTTCCCGGCCGCTTCGGTACCATGTTCCTCGAACGGCAGGATGGTGCGTTGCCTGCGCACTGCTTGCCTATTCTCCATGGCTGAGGCCTTTGACC
AGCAAATGCAGGAAGAGGATGCTGCTAGGCAGCGACAACCGCAAGAAGAGGAAGAACAAGGCCACCCGCAGGAAGCAGCACATCGTCAAGCCCCTACAAGAGGCTACTGAACTGGTGGAG
GCTGAACACATGGCACTGGGGGAATCGCTTACCATAGAGGATTCCCACT
GTCAGGTGGCTTGTTATGCCCAACCAAATATATCAAGGAGTCTGCCAAAATTGCCCCATTTTGGGGTCGAA
CTGCTGAAGCTTTTGGGGATCAGGCTTGTTGAACTCCTTGACGCCTTTGGTTGGCTTGTTTAGTCAGAGTTATTTGTGGAAGCCGCGTCCCTGGCTGGGGTATCTGGTTTGGATGCAAAC
CGCACTCGCCTATCACCACCAATGGTGGCTGAGATTATGGTGTCTTGAACATTGTTTCATTACACCTTTTTGGTGATCTTTTCTGAGACTTAACTGAACACAAGTTGTACAATGTAACGC
TGAATAAGGGACGCTGGACCGGTTTCCAGCAGGTGCAGCTCCCCACAAATAGAAAGAAGCCATCTGACAGAGGATACCGCAGGGGAATGCTCATATCACCCTCTGCGGTTCTCCCCGAGG
ATGTTAAAAAAAAGGGGTAAGTACGTTCATGTCACCTTTGATTATAGAATGGGCAAAAAAAAACACGCGTCGGCAAAGGAAACCGCGCCGAGTTCAAAAAGGCAACGGAAGTACCACCTG
CCGTGGTGTCAGACCGGGTGTCATATTTACAGGCGAAGCCCAACGGATACTTTTGGACCGCAATCGCTCATTTCGAGTTGGCGCGTGGTTTCTTTGCCGGCGCAAGTTTTTTTTGCCTTT
AGGGTTTCAAAAACATGCCGCGTCCGCCTTTATTTCTTAAAAAAAAAAAATTAAAAATCATTACACCTTCATTGAAGTTCCTGGCGAACGTCCATTTTGGCATTTGGAAGCAGGGCTTTC
GGCGATTCTTGAATCTCAAGGGGAACATGTATGATAGCTGACATTTGGGATGTTCAGATGGCCAATCGGAAAGTTGAGGAATGGTTGCTTGATTCTTTACCCTGATCGTGGATGCGTCAG
CAGCATCTTTACTTCTGCAGGATGCTATTCCCTTTCAGTGGGTGCACATCCTTAGAGAACGGATTGTTTGCAAGGAAATATTTTGGTATAAAAGTCAACAACAGTGGAGGCCACAGGTTA
TGAGGAGAATAGAGAGTGACACGGATCCTGGGCATCTGGAGTCTCTTCTTGGGTAGTTGATAGTGGTTGGACCTCTTTAGGGTCTGAATTTGACCTGACCGTCAAACCCTTGTTTCGTCT
GCCCCCTGCGAAGCTAATTACGCGTTACGCATCAGTTCACCACTTTGTTTTCAACTGAGAAAACAACGTTCGACTTGCATGTGTTAAAGCATCAGTACACCACACATCAGCCGGCGGGTG
TCAGCACGAAATGCACACCACTTCGGAGTCCGCCGATTTTTTTTTTCAACGGCGCTCCACACTGCGCGGCCCCTCCGAGTTTTGCTTGTGGCAACAAAAACTTTCTGCAAGGCTGGGGCC
GTGTACTTGCGGCTTAAGCATATCGCTAGCATTCATTCTGAGCCAAGATCAAACTCTGTTTTTTTTATTGTGGCTTAACTTCTGGGAATGTAGGATCCGTATGTGTACTGGACCTTTATG
GTTCCTTCCAACCCTTTGTGTAGGCCAGCCGTTTGAGTCACAGCCACTCAACCCCAGAGCTTGTGCCTGGCAACATCCTCTAAGCTCTTCTAAGCATGTGCCCCTATTCATGTCTACAGC
CACTGTTGGCCATCCCAGCCTAAGCCGGGTAGGGTACAAGATTGCCTCCCCCATTTCACGGCCGCATGAGCTAGGTCTGGAAGCCATTGCAGGACTTTTTTTTTTTTCTTCCTTTTAATT
AGCTCCAATCTATTGGTGGGGAGCATCACGTGCTGGAAATCGGGTCCAGCGTCCTTAGAACAATGAGTCCTCTGTTTACTTTAAGAACATAAATCATGGAACCAATGAGTAGAGGTCTGC
CTCTTCAGTTCTATGAGAACCGCCTGATCCATTGTTAACTTACTAGCATTCCTCTCAAATCCATCAGCAAATGATTATCAATTTGTAGCCTACTTGCACTGTTATTCCTCCTCTCTCCCA
AACCACTTAAGATCTACCAACGCCAGTTCAAGACTTTGCGGATGCCAACATTTATTATTTATTTATTTATTTATTTGCAATCAGACTCGCTTTCTTTCCACTTCACACACATGCAAACAG
ATGGTGATTCACACTGGCACACAGCGCCCACTCAAAGCTCAGAGATATGACAATTGAGAACGCAGTTCAGATGTAAACTCGCTTCAATAAGCTATGGCGCATCAGCGCCTACACAGTCCA
ACTCTTGCCACTGCGCTCAACACCACTGTTCACCCGCACTCAACTCTGGATCTCCCTGAATACACCCACACACACTCACTCGATATCCTACACACACACACACGCAGCTACCTCTACCCT
CGGCGGCTATGGCCGCTCGCCTCTACCGCTATGGCCACAATCTCGCTCTTCAGCCCACTTCGTCTTCGGGCAACCTGCAGACCACCTTCGCACAAGTCGCTGTAGCAGCGCTTCTGCATG
GTTTACGCAGCGAATGAATGAATGGCTGGGCGCTGCCTCTTGATTTATACTTCTGTAACTCGTTGGTCTGCCCCTTTCCACCGGGCCCATGGTGCACACAGTCCCTCACAGTACTTGCTT
GACTGGCTGTGACTGACTGGGACGGTACCGCTAACTGCACGGGATTGCACTGCCGACTCGATGCAGTCGCAATGCCGACGCAGTGATGTGGGGCTCACCACTTGCCCACTTGCCTCTGGC
TAAACGTGAGACAACTTTGAAAGGCCACTTCCGGACCTTCCGGAAGTCTGTGGACTTGGCCTTTTCGAGGACTGTAGCAGCTACGACCTTGACCTTTCAGGACTGTAGCAGCTACGACCT
TGACCTTTTAGGACATCTACAGCTACGACCTCTACAAAGCTGTGACTCCTATTCGACAGATCTACAGATCGAACCCCTACAACTACATAGACCTACGACAGACAACAAACAACTACCAAA
ACACAGATCACGGGTTCAAACACTCGGGGGTCAACTCGATACTGTACATGGGCAAGGTAAGGTCTGGGGATCGAACTCTAGGGCCCGCATCTATGACTGCAGAAAGGTGGAAACCGTTTC
ACTCCCGCCGGCCTAAATCCGAGGTCCTCCGAGAATACTTCAGTCTAAGGCAGGACCTTTACCTTTCTTATCTCTTTTATAAGCTCTGACTATGTTGGGAGTTGTCTCTAGAAGTTCTGT
TCGCGTGAACCAGCGGTCGTCTTCTGGTTCTTGGAAGGAAAATCTGACTTTGTACTGTTTCTGTGGACAACCTCTACCTCCTGTCCTGAAGACATCCTCACCTACTATACCATCAATGTC
ATATCTTCCGTCCATATCTGGAGGAATCATAGATCTGCGTGATGGAAACTGTTGACTGGTGACGCAAGGCAACAACTTCGACGCATGGAACGCTGGGTAGGTGTGGAGGTGTGCTGGAAT
CTTAATAGTATAGGACGGTCCATCCTCTCCGCCCTTAACTTCTAGGACCGGCCACGGTCCTTTATATGCAAGCAACAACTTTTGTGAGATGTTCTCCTCAGAGGCAAACTCTTTTGACTT
GACCCAGACTAAGTCGCCTACTTGAAACTGTGAGGGGCGACGGTGCTTGTTAGCTTGCTCTATCATTCTGTGCTGGGCTTTCCTGAGGTTGTCAACAACGGTAGCTATCTCTTTCTCATG
CTATATCGCAAACTCTCGTGTGTCGGGCGGTAACCTCTGAATCTGATCCTGGTTAAGTCCCTCAAACAGTTTGCGCGGTCTAAAAGACTTGTGCAGTTCGTTGGGAGTGCGACATGTAGA
TAAGTGCACGCTATTATTATATGCACTGGCTACCTTAGGAAGCATCTCATCCCAGTTGATCTGGTCGGGCCTAATGTACATCCTAAAAACTTGTTGTAGGAGCTTGTTCATTTGTTCAGT
CTGACCGTTAGTCTCAAGGTGACGGCCAGATGACATCAACAACTTGGAGCCATGGACTCTCATTAGCTCCTGCTAGTTCTGACTGGTGAATCTTGTATCCTTGTCACTAACTATCGACAG
CGGTATTAAGTTTGTGCATGCCTCTGCAGGCAAAGGAACAAAAACTGCATACTTGCTAAATCTATCTAGCCATGCCTACTCTTGACTCCAACATCCATAAAGTCAATGGATACAGAATCT
CCGGGTCTATCAGGAATAGGCAAGGGTCTGAGAAGACCAAGAGGGGCTCGCGTCGTAGTCTTATTCCTCTGACAAATTTTATAATTGCGGACATACTCTATGCAGTCGGCCTTCATAATG
CCAGATGTACGCGCACATGAGGTTGGCTAGTGTCTTTTGCCAACCAAAGTGTCCCTCTGTGTCATGGCATTCCCCTAAGATCAAACTACGGATCTCTTCACTGTTGGGAACGCACAGGCG
GTCAACTACATTAGTCTTCTCAAATAATAAGCCATCAGTAGTGCGGTACTCTGGTTCAGACTCTGGGGTCTCCCTAACTCTCTTGAGTAGGTCACTATAGATAGGGTCCTGTGCATATGC
CTCTCTAACTTTCTGTTGCAGGTCTCTCCCTATATTCAAATAGTGAATTGTTGCCCCAAAGTAATCAGCTCTCCTACTTAGAGCGTCCGCTACTACAGACATGAACTCTACGGGCCAATA
TCCATTGCCATCATCTTGCTGTAAAACAACACATATGCCATACTGACTTGCGTCAGTAGTAACAATGAAAGGCAGGGATGGATCGACTACCTTAAGGACTGGGTACTCTATCAAAGCCCG
CTTCAATCTCTTCAGGGCAGATGTGCAGTCCTTGTCCCACTTCCAGATTGCTTCTTTCTTTAGCAATCTACGAAGGGGTGCAGCGATGGTGGAGAAGTTTCTGGCAAACTTCCTATAATG
GTTAGCTAGGCCTCTGTCAGTGTGTGGGGCGTTGGCCAATCTCTAATCGCTGCAATTTTGTTATCTTCAGGTCTCCGTCTAAGACGTGGCCCAGGTACAAAACCTGTGTCTTGGCCCATT
CGCACTTCTTTGCGTTGATCTTGAAGTTAGCTTCTCTAAGCTTCTCAAAGACCTGCCTCAGATGGCCCTCGTGCTCCTGGAGGGTCTTACTAAACACTAGGATATCATCTAAATACACTA
CAACAAATCTATCTAACCACGGCCTAAACAAATCAGTCATACAACGCTGGAAAGTTGTTGGCGCATTGGTTAGTCCAAAGGGCATAACTATAAACTCGTAGTGCCCATATCTAGTTCGGA
ATGTTGTCTTGTACTAGTCATCAGGATGAACCTCTATCTGATGATAGTCGAACTTCAAGTCTATCTTCGAAAAGTATTTGCAGCCCTGCACCCGGTCTAACAAATCGTCTATACGGGGCA
GCGGTTCTGCATTCTTAACCGTAATAGCATTGAGACCTCTATAGTCTATACACATTCTGAGCTCTCCCTCTTTCTTGGGGACAAAGAGAACAGGTGTTCCAAATGGAGACGAACTGGGCC
TAATCCAACCCTTCTCAAGGAGCTCGTCTAAGTGCTTACGCAACTCCTCTAACTCCCTTGGGGACATTCCGTAAATCACTCCCTTAGGAGTCCTACTGCCAGGCTCTATCTCTATGCGAT
GTTGGATCGGCCGCGGCGCTACTCTTGTAGGCGGCTTAACTAAATCTGTATATTCTTCCAGCAGCTTGGCAATAGCGGGCTCCATGGGTGTCTCCTCCTTAGGCTCAGTAATTGGCCTCA
CGTAGGCTACAAATACCTGTTCTTCTAATTGCTCCTTCTTCACTAAACGCGCGAACGCGGGAGCACTAAGGCAGCAATGTGCCAGAGTGTTATCTACTCATGACACATGAAACAGGCGAG
CAGTCTTAACTTCACTTGTGGGACTAGGGGGCCTACACTTGTGCTCTCTCAAATGGAGTGTGGCCCCTGCTGCCTCTCCCAGTCCATTCCTAGGACTATATCGAAAGGAAGGTTGTCTTC
CACGAGGAGAGTCAGGAGTGGAGAACTTTCTCCACCTTCCCATCTTTCTCTAGGCGAAAGTACGCCTGGACTCCCTCAACGTAATCCTCGATTCGCATAGTGCGATTGTCTGCGAGGATG
ATGACTATAGGGTCTGCTAACTTTTGGACTTTCAGATTTAGCTTAAACTTCTGCAGCGCTTTCCTACTGATATAGCTGCGGGTGGCCCCATTGTCTATAAGGGCACCTACTCTGCCTCTA
AAGACCTCTACATCTACTAAAACTAGTTGTCCTTTCGCATCCTTCTTCATCTTGGCCCAGGCAGGCATCCTCTCCTTCAACTCTTCAGCCACGCCTGTGAGGGAAGTACCTAGAGAGACC
CTTACACAAGCAGTCTCTCGACAGTTGTCTACGTACTGGCCAGCAACCTCTGTCGTAGGCTCATGTGGTTTGGGAGTTCCTCTGTGGTGCACGCACTCTTCTCCACATGGCCTAGGGGTG
AGGGCAGTTGCGACCCCTACCGGCGGTTGCCTTTTGCTGCTTGTGCAGCATAACGGGTTTCCCTATACTTTGAACAATACTTAATTATGTGGCCAGGATCACCGCAGTAAATGCATTGAT
CCTGGTCCACACGACGCTGCCATACGGACTCGTCCAAGCCCAGGTCTTCCCATGACCTGCCCTGTGGCAAGCCAATGTGCCATCCACCTCTCCTTGGAGGTGACCGATAAGATCGTGAGC
GATTTGGCGGGGGACCTTGACCCCTACCTCCCTCTTGGCGGTTTCCTCTGCCGCCAACCCTCTGAGCGCCTTGTCCTCGGCCACCTGAGGGCCGGCCCCCTTGGCCCTGGCCTCCTCCTC
TAGCTTCCGGCCTCCCTCCAGCCGCAACAGTAGCGTAGGTCCTCCCCTGACCCCCACTGATGTCCTCCCCTGACCCCCACTGATGTCCTCCTCCTCTAGGCCCCACTCAATTTGACTGTA
GGGGACCTCGCTCATACCACCTTCATCTAAAGTAAGGATCAAATGATCCTTGGCCCTAACCTGGCCAGAGATGGTACGGCCCTTCCACTTTTTCCCTTTATCCAAGTCCTTGTGCCAGAA
AGTGAAAATTGGCATGGACTGTGCATCGACTTCTCTACTCAACGCGTCGTACATCATGGTGGGCTGTTTGCTTTTCTCAAAGAAGTGAACTCGCAGGGGCTCTGGCATGGCACGGTAAAA
TAGGTTAACCAACTGGGGCTCAGTGACCCCGTGGTCCGGGACGACTACTAGCTTGTCCATTACGCCCTTGAGTGCCCTTGCACTCCCCCACTGGCAGGAGTGGATAGTTTGCAGCTTGTC
AGAGGCTCTAACGCCTCATGTGGCATCTGCAAACCGTTTCTTTAATAATTTAAGGAATTCAGGGAGAGGAGTAATTTTAGAGTAGTCTACCATTTCGCACTGTGCAGCGCGAGCGAGGGA
TCTGGGCCATCTGGCAAAGCTAGCCGCTTCGTCTTTGAGCGCCTGGAAGGCAATGAGGACTTGTTCCTCAGGCACAATATGCTGCAAATAGACATATGTGTTGGTACTCGCCTCTCACTT
ATCGAAGTTTTCCTCCTCCTTCCCACTATAGGGTTCAGGAAATTTGATCTTCACGGGCTCTCTACGGGGGTGTGGCTCTTCCTCCTTAGGAGCGGCCAACTTTGCGCCTTCAATGGCGCC
TATACAAAATTTCTCTGTACCCTCTATCCTCGCCTGCACTTCTGCACCTACATGCAGCATCATCTCGCGTGTGAAATCCCTAAATCCCAGACAGATGGAGTGTAAAGCGATGTCCTGGGC
TCTAGAAAACTGGTGTTGCTCGTCCCAGGCTCCTGAATGCAACTTTTGTGCCTTACCAACTGAGCTAGCCACAGGCGCTGGCCATCTTATTATCCTCTAGGTGAGATTTTTTTTAATCTC
TTTTCTTTTTCTCTCTCTTTCTTTCTTTCTTCCTTTATTTTACTTCTCTTATCATCATTGAACCGACCGGCCCTACTTTCTTCCCCCGAATACAACACACTGTCATTATAGCTGTATTTA
GACCAAAAGATGCCCCAAAATACAGCTATAATGACCGTGCGTTGTATTCGGGGGAGGAAGGTAGGTAATTCAGAATTGCAGTATGTTGCTCATCGGCTTCACTTGAGTTCGAACTCAGGT
TTGTATTTCAACAGTTCAGGGGTGCACCAACTGAGCTAGGCCAGTTGGTACGTGAGGTAGTTTTGGGGCAGAGGGCTCCCCCTCTTTGTTTCTGCCCATTTTTCTTTCTCAAATTGTCTG
CCTGGGGTTGTTTGGGCAGGCTGGGCTATTTCTGATCTGCGAGGTACAGTAGACAGTCCAATGCCTAAGTGTTTTCCGGTAAATTTTAACCGATAAGGAAAAGATTTGCAATTGCCACTG
CTCATATAACTTGAGTAATGCATCCATCCATCAACTTCCCGAGGAAACCAATCATGTAGAGAAAGTACAAGGTCTTAGAGAGATTAATTGGAGAGAAGATTCAGAAGAAGGCATTCATTT
TAAATTCAGTTGTCTGGTTTCGGAGAAAGGCCATCAATCTTTCAGAAAAAAAAAAAAAAAGAAGGGGGAAGTACATTGGAGTCACGCCCAACGTTCAGAATAGCCGACTTTAGCAGTTGC
CGAAATTTAATGGAGCAAAAAAGGCAACCCTAAATCTGCCAAGCGCAACTGCGGGTAATGACTGCCACAGTTTTAGAGACCCCCCGCTAAACTTGCACATTTCGAAACTCACACCATGAC
ACCGGCACCACTTTGTCTTTTCATGCCTATTTCAAACTGAAAGTGTGTCACAGCCACAGTTTCCCCAAATAAGAAGCCAGCTGGCACTGCTAGTGATGGTGATACAAGCTCCCAACACTA
CAGTCTTCCCCCGAGTACAACGTACGGTCATTATAGCTGAATTTGGGGTATCTTTCCGTGTAAATTCAGCTATAATGACCGTACGTTGTGTTCGGAGGAAGACTGTAGCAGTCCACCGCA
GGCTCCAATCTATTGGTGGGGAGCAGCCCCTGCTGGAAATCGGGTCCAGCGTCCCTTGTACATAATAACTGAGAAGTGCTGAGAGTTTGAGCCTGGTTGAGTAGTCTGTGTTCGCCTGCA
GCCAGCCTCCTCGGCCCACAAATGGCCGCCAGATTCCTTCCCATTGTCCTAGCTGGTTAAACATCTTGCTCCCTGGCAAGACCGACCTAAAGTTCAGAGTCCTTGTTGGTTTATATCTTC
AACTTTCTGGCAGGTCTCACTGTCGCATGGTTTACGGCCACGTGGTGCGGCCCTTGCCGTCAGATCACTCCGGTGGTGACTAAACTCAACAACGATTACCCACTTGTGAAGTTCTTGAAG
GTACGTTTTGAGCCTCCTTCAACCCCCTTCCACCCCCGAACCCTGCACCAATCATCTCGCCTGTTTCCTCGTTTTTCCCGTGTGCCCCCCTCGCCCCTTGTATGATCTACATGCTAGCTG
TGCATGTGCCTCTTCATCTAAATTTAGACCACAAGAGCTTTATGAGCCTCTTCAAGATGGAATCGGATTCAGCTACTGAAACCCTGGCATTATCCTTGAGTGAGAAGGCAAACTTCGTTC
TTGAGCCCAAAACAAAAAAAAGAAAGCTGAGAAGTAAAAAATGCCCCATCCCAAGACCTTGATCTGCGGTTTTAGCCCCTCCTGACAAATACATCAAAAAGGCCTTGGCGGACATCTGAA
AAACCCCTGCAGTCATCATCGTCGATCCCAGGTTGTGGTGTGTTCAAGAGTGTTTTTGTGCATGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGATTTGGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCCAATAGTTACATAGGGTGCTT
CTGCAGGTTGGCATCCAATCCATCTTAAAAGTAGACAAGCTGACAGAAATAATGCAAAAAGCTTTTGAGAAACGGGTTTACATGCTAAGTTTAGCCTTTCCATCTGATGTGTAACCGCCA
TTTCGGTACATTTGAGATAAATATTTTTAATGCATGAAATTGAAATTTGCTTTTCAGCCTTTTAGGGGTATTTGTATGGGGTAGGCTGGAAGTTGTACTCTCTCTCTCTCTCTCTCTCTC
GCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCACCCACTCACTCCAAAAAATAGTGAAGTCTCAAGTTTAGCGAAATGGCTG
TTTTTTTTTTCCCTTTTTTGCCCGCAGATTGACGTTGATGAGAATCAAGATCTTGCGCTCTCGGAGGGCATACAATCCGTGCCAACCTTTCGATTCATCAAGGCTGGCCGGCAGGTTTCT
GAGATCAAAGGTGCAAATGCTCTTTCTCTAGAGGCAACTGTCAAGATGTGGGCGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCAGAATGCCGCGTAGTGCCTGCTTCCCGGCCGCTTCGGTACCATGTTCCTCGAACGGCAGGATGGTGCGTTGCCTGCGCACTGCTTGCCTATTCTCCATGGCTGAGGCCTTTGACC
AGCAAATGCAGGAAGAGGATGCTGCTAGGCAGCGACAACCGCAAGAAGAGGAAGAACAAGGCCACCCGCAGGAAGCAGCACATCGTCAAGCCCCTACAAGAGGCTACTGAACTGGTGGAG
GCTGAACACATGGCACTGGGGGAATCGCTTACCATAGAGGATTCCCACT
GTCTCACTGTCGCATGGTTTACGGCCACGTGGTGCGGCCCTTGCCGTCAGATCACTCCGGTGGTGACTAAA
CTCAACAACGATTACCCACTTGTGAAGTTCTTGAAG
ATTGACGTTGATGAGAATCAAGATCTTGCGCTCTCGGAGGGCATACAATCCGTGCCAACCTTTCGATTCATCAAGGCTGGCCGG
CAGGTTTCTGAGATCAAAGGTGCAAATGCTCTTTCTCTAGAGGCAACTGTCAAGATGTGGGCGTGA

Retrieve as FASTA