Entry information : CbraTDX01 (g30929/CHBRA371g00080)
Entry ID 14209
Creation 2016-10-27 (Christophe Dunand)
Last sequence changes 2016-11-04 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-11-04 (Christophe Dunand)
Peroxidase information: CbraTDX01 (g30929/CHBRA371g00080)
Name (synonym) CbraTDX01 (g30929/CHBRA371g00080)
Class Thioredoxin Type TDX    [Orthogroup: TDX001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraTDX01
start..stop
S start..stop
KflTDX02 103 2.19e-26 98..177 415..494
HaTDX01 100 8.53e-26 57..181 226..363
KflTrxH02 94 2.46e-25 88..177 21..110
KflTrxH03 90 4.7e-24 88..177 18..107
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '14209' 'join(157459..157747,166952..167058,168046..168195)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 157459..157747 287 N° 2 166952..167058 105 N° 3 168046..168195 148  
join(157459..157747,166952..167058,168046..168195)


exon

Literature and cross-references CbraTDX01 (g30929/CHBRA371g00080)
Protein sequence: CbraTDX01 (g30929/CHBRA371g00080)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   181
PWM (Da):   %s   20434.7  
PI (pH):   %s   9.99
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSECRVVPASRPLRYHVPRTAGWCVACALLAYSPWLRPLTSKCRKRMLLGSDNRKKRKNKATRRKQHIVKPLQEATELVEAEHMALGESLTIEDSHCLTVAWFTATWCGPCRQITPVVTK
LNNDYPLVKFLKIDVDENQDLALSEGIQSVPTFRFIKAGRQVSEIKGANALSLEATVKMWA*

Retrieve as FASTA  
Remarks
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCAGAATGCCGCGTAGTGCCTGCTTCCCGGCCGCTTCGGTACCATGTTCCTCGAACGGCAGGATGGTGCGTTGCCTGCGCACTGCTTGCCTATTCTCCATGGCTGAGGCCTTTGACC
AGCAAATGCAGGAAGAGGATGCTGCTAGGCAGCGACAACCGCAAGAAGAGGAAGAACAAGGCCACCCGCAGGAAGCAGCACATCGTCAAGCCCCTACAAGAGGCTACTGAACTGGTGGAG
GCTGAACACATGGCACTGGGGGAATCGCTTACCATAGAGGATTCCCACT
CTGTCAGGTGGCTTGTTATGCCCAACCAAATATATCAAGGAGTCTGCCAAAATTGCCCCATTTTGGGGTCG
AACTGCTGAAGCTTTTGGGGATCAGGCTTGTTGAACTCCTTGACGCCTTTGGTTGGCTTGTTTAGTCAGAGTTATTTGTGGAAGCCGCGTCCCTGGCTGGGGTATCTGGTTTGGATGCAA
ACCGCACTCGCCTATCACCACCAATGGTGGCTGAGATTATGGTGTCTTGAACATTGTTTCATTACACCTTTTTGGTGATCTTTTCTGAGACTTAACTGAACACAAGTTGTACAATGTAAC
GCTGAATAAGGGACGCTGGACCGGTTTCCAGCAGGTGCAGCTCCCCACAAATAGAAAGAAGCCATCTGACAGAGGATACCGCAGGGGAATGCTCATATCACCCTCTGCGGTTCTCCCCGA
GGATGTTAAAAAAAAGGGGTAAGTACGTTCATGTCACCTTTGATTATAGAATGGGCAAAAAAAAACACGCGTCGGCAAAGGAAACCGCGCCGAGTTCAAAAAGGCAACGGAAGTACCACC
TGCCGTGGTGTCAGACCGGGTGTCATATTTACAGGCGAAGCCCAACGGATACTTTTGGACCGCAATCGCTCATTTCGAGTTGGCGCGTGGTTTCTTTGCCGGCGCAAGTTTTTTTTGCCT
TTAGGGTTTCAAAAACATGCCGCGTCCGCCTTTATTTCTTAAAAAAAAAAAATTAAAAATCATTACACCTTCATTGAAGTTCCTGGCGAACGTCCATTTTGGCATTTGGAAGCAGGGCTT
TCGGCGATTCTTGAATCTCAAGGGGAACATGTATGATAGCTGACATTTGGGATGTTCAGATGGCCAATCGGAAAGTTGAGGAATGGTTGCTTGATTCTTTACCCTGATCGTGGATGCGTC
AGCAGCATCTTTACTTCTGCAGGATGCTATTCCCTTTCAGTGGGTGCACATCCTTAGAGAACGGATTGTTTGCAAGGAAATATTTTGGTATAAAAGTCAACAACAGTGGAGGCCACAGGT
TATGAGGAGAATAGAGAGTGACACGGATCCTGGGCATCTGGAGTCTCTTCTTGGGTAGTTGATAGTGGTTGGACCTCTTTAGGGTCTGAATTTGACCTGACCGTCAAACCCTTGTTTCGT
CTGCCCCCTGCGAAGCTAATTACGCGTTACGCATCAGTTCACCACTTTGTTTTCAACTGAGAAAACAACGTTCGACTTGCATGTGTTAAAGCATCAGTACACCACACATCAGCCGGCGGG
TGTCAGCACGAAATGCACACCACTTCGGAGTCCGCCGATTTTTTTTTTCAACGGCGCTCCACACTGCGCGGCCCCTCCGAGTTTTGCTTGTGGCAACAAAAACTTTCTGCAAGGCTGGGG
CCGTGTACTTGCGGCTTAAGCATATCGCTAGCATTCATTCTGAGCCAAGATCAAACTCTGTTTTTTTTATTGTGGCTTAACTTCTGGGAATGTAGGATCCGTATGTGTACTGGACCTTTA
TGGTTCCTTCCAACCCTTTGTGTAGGCCAGCCGTTTGAGTCACAGCCACTCAACCCCAGAGCTTGTGCCTGGCAACATCCTCTAAGCTCTTCTAAGCATGTGCCCCTATTCATGTCTACA
GCCACTGTTGGCCATCCCAGCCTAAGCCGGGTAGGGTACAAGATTGCCTCCCCCATTTCACGGCCGCATGAGCTAGGTCTGGAAGCCATTGCAGGACTTTTTTTTTTTTCTTCCTTTTAA
TTAGCTCCAATCTATTGGTGGGGAGCATCACGTGCTGGAAATCGGGTCCAGCGTCCTTAGAACAATGAGTCCTCTGTTTACTTTAAGAACATAAATCATGGAACCAATGAGTAGAGGTCT
GCCTCTTCAGTTCTATGAGAACCGCCTGATCCATTGTTAACTTACTAGCATTCCTCTCAAATCCATCAGCAAATGATTATCAATTTGTAGCCTACTTGCACTGTTATTCCTCCTCTCTCC
CAAACCACTTAAGATCTACCAACGCCAGTTCAAGACTTTGCGGATGCCAACATTTATTATTTATTTATTTATTTATTTGCAATCAGACTCGCTTTCTTTCCACTTCACACACATGCAAAC
AGATGGTGATTCACACTGGCACACAGCGCCCACTCAAAGCTCAGAGATATGACAATTGAGAACGCAGTTCAGATGTAAACTCGCTTCAATAAGCTATGGCGCATCAGCGCCTACACAGTC
CAACTCTTGCCACTGCGCTCAACACCACTGTTCACCCGCACTCAACTCTGGATCTCCCTGAATACACCCACACACACTCACTCGATATCCTACACACACACACACGCAGCTACCTCTACC
CTCGGCGGCTATGGCCGCTCGCCTCTACCGCTATGGCCACAATCTCGCTCTTCAGCCCACTTCGTCTTCGGGCAACCTGCAGACCACCTTCGCACAAGTCGCTGTAGCAGCGCTTCTGCA
TGGTTTACGCAGCGAATGAATGAATGGCTGGGCGCTGCCTCTTGATTTATACTTCTGTAACTCGTTGGTCTGCCCCTTTCCACCGGGCCCATGGTGCACACAGTCCCTCACAGTACTTGC
TTGACTGGCTGTGACTGACTGGGACGGTACCGCTAACTGCACGGGATTGCACTGCCGACTCGATGCAGTCGCAATGCCGACGCAGTGATGTGGGGCTCACCACTTGCCCACTTGCCTCTG
GCTAAACGTGAGACAACTTTGAAAGGCCACTTCCGGACCTTCCGGAAGTCTGTGGACTTGGCCTTTTCGAGGACTGTAGCAGCTACGACCTTGACCTTTCAGGACTGTAGCAGCTACGAC
CTTGACCTTTTAGGACATCTACAGCTACGACCTCTACAAAGCTGTGACTCCTATTCGACAGATCTACAGATCGAACCCCTACAACTACATAGACCTACGACAGACAACAAACAACTACCA
AAACACAGATCACGGGTTCAAACACTCGGGGGTCAACTCGATACTGTACATGGGCAAGGTAAGGTCTGGGGATCGAACTCTAGGGCCCGCATCTATGACTGCAGAAAGGTGGAAACCGTT
TCACTCCCGCCGGCCTAAATCCGAGGTCCTCCGAGAATACTTCAGTCTAAGGCAGGACCTTTACCTTTCTTATCTCTTTTATAAGCTCTGACTATGTTGGGAGTTGTCTCTAGAAGTTCT
GTTCGCGTGAACCAGCGGTCGTCTTCTGGTTCTTGGAAGGAAAATCTGACTTTGTACTGTTTCTGTGGACAACCTCTACCTCCTGTCCTGAAGACATCCTCACCTACTATACCATCAATG
TCATATCTTCCGTCCATATCTGGAGGAATCATAGATCTGCGTGATGGAAACTGTTGACTGGTGACGCAAGGCAACAACTTCGACGCATGGAACGCTGGGTAGGTGTGGAGGTGTGCTGGA
ATCTTAATAGTATAGGACGGTCCATCCTCTCCGCCCTTAACTTCTAGGACCGGCCACGGTCCTTTATATGCAAGCAACAACTTTTGTGAGATGTTCTCCTCAGAGGCAAACTCTTTTGAC
TTGACCCAGACTAAGTCGCCTACTTGAAACTGTGAGGGGCGACGGTGCTTGTTAGCTTGCTCTATCATTCTGTGCTGGGCTTTCCTGAGGTTGTCAACAACGGTAGCTATCTCTTTCTCA
TGCTATATCGCAAACTCTCGTGTGTCGGGCGGTAACCTCTGAATCTGATCCTGGTTAAGTCCCTCAAACAGTTTGCGCGGTCTAAAAGACTTGTGCAGTTCGTTGGGAGTGCGACATGTA
GATAAGTGCACGCTATTATTATATGCACTGGCTACCTTAGGAAGCATCTCATCCCAGTTGATCTGGTCGGGCCTAATGTACATCCTAAAAACTTGTTGTAGGAGCTTGTTCATTTGTTCA
GTCTGACCGTTAGTCTCAAGGTGACGGCCAGATGACATCAACAACTTGGAGCCATGGACTCTCATTAGCTCCTGCTAGTTCTGACTGGTGAATCTTGTATCCTTGTCACTAACTATCGAC
AGCGGTATTAAGTTTGTGCATGCCTCTGCAGGCAAAGGAACAAAAACTGCATACTTGCTAAATCTATCTAGCCATGCCTACTCTTGACTCCAACATCCATAAAGTCAATGGATACAGAAT
CTCCGGGTCTATCAGGAATAGGCAAGGGTCTGAGAAGACCAAGAGGGGCTCGCGTCGTAGTCTTATTCCTCTGACAAATTTTATAATTGCGGACATACTCTATGCAGTCGGCCTTCATAA
TGCCAGATGTACGCGCACATGAGGTTGGCTAGTGTCTTTTGCCAACCAAAGTGTCCCTCTGTGTCATGGCATTCCCCTAAGATCAAACTACGGATCTCTTCACTGTTGGGAACGCACAGG
CGGTCAACTACATTAGTCTTCTCAAATAATAAGCCATCAGTAGTGCGGTACTCTGGTTCAGACTCTGGGGTCTCCCTAACTCTCTTGAGTAGGTCACTATAGATAGGGTCCTGTGCATAT
GCCTCTCTAACTTTCTGTTGCAGGTCTCTCCCTATATTCAAATAGTGAATTGTTGCCCCAAAGTAATCAGCTCTCCTACTTAGAGCGTCCGCTACTACAGACATGAACTCTACGGGCCAA
TATCCATTGCCATCATCTTGCTGTAAAACAACACATATGCCATACTGACTTGCGTCAGTAGTAACAATGAAAGGCAGGGATGGATCGACTACCTTAAGGACTGGGTACTCTATCAAAGCC
CGCTTCAATCTCTTCAGGGCAGATGTGCAGTCCTTGTCCCACTTCCAGATTGCTTCTTTCTTTAGCAATCTACGAAGGGGTGCAGCGATGGTGGAGAAGTTTCTGGCAAACTTCCTATAA
TGGTTAGCTAGGCCTCTGTCAGTGTGTGGGGCGTTGGCCAATCTCTAATCGCTGCAATTTTGTTATCTTCAGGTCTCCGTCTAAGACGTGGCCCAGGTACAAAACCTGTGTCTTGGCCCA
TTCGCACTTCTTTGCGTTGATCTTGAAGTTAGCTTCTCTAAGCTTCTCAAAGACCTGCCTCAGATGGCCCTCGTGCTCCTGGAGGGTCTTACTAAACACTAGGATATCATCTAAATACAC
TACAACAAATCTATCTAACCACGGCCTAAACAAATCAGTCATACAACGCTGGAAAGTTGTTGGCGCATTGGTTAGTCCAAAGGGCATAACTATAAACTCGTAGTGCCCATATCTAGTTCG
GAATGTTGTCTTGTACTAGTCATCAGGATGAACCTCTATCTGATGATAGTCGAACTTCAAGTCTATCTTCGAAAAGTATTTGCAGCCCTGCACCCGGTCTAACAAATCGTCTATACGGGG
CAGCGGTTCTGCATTCTTAACCGTAATAGCATTGAGACCTCTATAGTCTATACACATTCTGAGCTCTCCCTCTTTCTTGGGGACAAAGAGAACAGGTGTTCCAAATGGAGACGAACTGGG
CCTAATCCAACCCTTCTCAAGGAGCTCGTCTAAGTGCTTACGCAACTCCTCTAACTCCCTTGGGGACATTCCGTAAATCACTCCCTTAGGAGTCCTACTGCCAGGCTCTATCTCTATGCG
ATGTTGGATCGGCCGCGGCGCTACTCTTGTAGGCGGCTTAACTAAATCTGTATATTCTTCCAGCAGCTTGGCAATAGCGGGCTCCATGGGTGTCTCCTCCTTAGGCTCAGTAATTGGCCT
CACGTAGGCTACAAATACCTGTTCTTCTAATTGCTCCTTCTTCACTAAACGCGCGAACGCGGGAGCACTAAGGCAGCAATGTGCCAGAGTGTTATCTACTCATGACACATGAAACAGGCG
AGCAGTCTTAACTTCACTTGTGGGACTAGGGGGCCTACACTTGTGCTCTCTCAAATGGAGTGTGGCCCCTGCTGCCTCTCCCAGTCCATTCCTAGGACTATATCGAAAGGAAGGTTGTCT
TCCACGAGGAGAGTCAGGAGTGGAGAACTTTCTCCACCTTCCCATCTTTCTCTAGGCGAAAGTACGCCTGGACTCCCTCAACGTAATCCTCGATTCGCATAGTGCGATTGTCTGCGAGGA
TGATGACTATAGGGTCTGCTAACTTTTGGACTTTCAGATTTAGCTTAAACTTCTGCAGCGCTTTCCTACTGATATAGCTGCGGGTGGCCCCATTGTCTATAAGGGCACCTACTCTGCCTC
TAAAGACCTCTACATCTACTAAAACTAGTTGTCCTTTCGCATCCTTCTTCATCTTGGCCCAGGCAGGCATCCTCTCCTTCAACTCTTCAGCCACGCCTGTGAGGGAAGTACCTAGAGAGA
CCCTTACACAAGCAGTCTCTCGACAGTTGTCTACGTACTGGCCAGCAACCTCTGTCGTAGGCTCATGTGGTTTGGGAGTTCCTCTGTGGTGCACGCACTCTTCTCCACATGGCCTAGGGG
TGAGGGCAGTTGCGACCCCTACCGGCGGTTGCCTTTTGCTGCTTGTGCAGCATAACGGGTTTCCCTATACTTTGAACAATACTTAATTATGTGGCCAGGATCACCGCAGTAAATGCATTG
ATCCTGGTCCACACGACGCTGCCATACGGACTCGTCCAAGCCCAGGTCTTCCCATGACCTGCCCTGTGGCAAGCCAATGTGCCATCCACCTCTCCTTGGAGGTGACCGATAAGATCGTGA
GCGATTTGGCGGGGGACCTTGACCCCTACCTCCCTCTTGGCGGTTTCCTCTGCCGCCAACCCTCTGAGCGCCTTGTCCTCGGCCACCTGAGGGCCGGCCCCCTTGGCCCTGGCCTCCTCC
TCTAGCTTCCGGCCTCCCTCCAGCCGCAACAGTAGCGTAGGTCCTCCCCTGACCCCCACTGATGTCCTCCCCTGACCCCCACTGATGTCCTCCTCCTCTAGGCCCCACTCAATTTGACTG
TAGGGGACCTCGCTCATACCACCTTCATCTAAAGTAAGGATCAAATGATCCTTGGCCCTAACCTGGCCAGAGATGGTACGGCCCTTCCACTTTTTCCCTTTATCCAAGTCCTTGTGCCAG
AAAGTGAAAATTGGCATGGACTGTGCATCGACTTCTCTACTCAACGCGTCGTACATCATGGTGGGCTGTTTGCTTTTCTCAAAGAAGTGAACTCGCAGGGGCTCTGGCATGGCACGGTAA
AATAGGTTAACCAACTGGGGCTCAGTGACCCCGTGGTCCGGGACGACTACTAGCTTGTCCATTACGCCCTTGAGTGCCCTTGCACTCCCCCACTGGCAGGAGTGGATAGTTTGCAGCTTG
TCAGAGGCTCTAACGCCTCATGTGGCATCTGCAAACCGTTTCTTTAATAATTTAAGGAATTCAGGGAGAGGAGTAATTTTAGAGTAGTCTACCATTTCGCACTGTGCAGCGCGAGCGAGG
GATCTGGGCCATCTGGCAAAGCTAGCCGCTTCGTCTTTGAGCGCCTGGAAGGCAATGAGGACTTGTTCCTCAGGCACAATATGCTGCAAATAGACATATGTGTTGGTACTCGCCTCTCAC
TTATCGAAGTTTTCCTCCTCCTTCCCACTATAGGGTTCAGGAAATTTGATCTTCACGGGCTCTCTACGGGGGTGTGGCTCTTCCTCCTTAGGAGCGGCCAACTTTGCGCCTTCAATGGCG
CCTATACAAAATTTCTCTGTACCCTCTATCCTCGCCTGCACTTCTGCACCTACATGCAGCATCATCTCGCGTGTGAAATCCCTAAATCCCAGACAGATGGAGTGTAAAGCGATGTCCTGG
GCTCTAGAAAACTGGTGTTGCTCGTCCCAGGCTCCTGAATGCAACTTTTGTGCCTTACCAACTGAGCTAGCCACAGGCGCTGGCCATCTTATTATCCTCTAGGTGAGATTTTTTTTAATC
TCTTTTCTTTTTCTCTCTCTTTCTTTCTTTCTTCCTTTATTTTACTTCTCTTATCATCATTGAACCGACCGGCCCTACTTTCTTCCCCCGAATACAACACACTGTCATTATAGCTGTATT
TAGACCAAAAGATGCCCCAAAATACAGCTATAATGACCGTGCGTTGTATTCGGGGGAGGAAGGTAGGTAATTCAGAATTGCAGTATGTTGCTCATCGGCTTCACTTGAGTTCGAACTCAG
GTTTGTATTTCAACAGTTCAGGGGTGCACCAACTGAGCTAGGCCAGTTGGTACGTGAGGTAGTTTTGGGGCAGAGGGCTCCCCCTCTTTGTTTCTGCCCATTTTTCTTTCTCAAATTGTC
TGCCTGGGGTTGTTTGGGCAGGCTGGGCTATTTCTGATCTGCGAGGTACAGTAGACAGTCCAATGCCTAAGTGTTTTCCGGTAAATTTTAACCGATAAGGAAAAGATTTGCAATTGCCAC
TGCTCATATAACTTGAGTAATGCATCCATCCATCAACTTCCCGAGGAAACCAATCATGTAGAGAAAGTACAAGGTCTTAGAGAGATTAATTGGAGAGAAGATTCAGAAGAAGGCATTCAT
TTTAAATTCAGTTGTCTGGTTTCGGAGAAAGGCCATCAATCTTTCAGAAAAAAAAAAAAAAAGAAGGGGGAAGTACATTGGAGTCACGCCCAACGTTCAGAATAGCCGACTTTAGCAGTT
GCCGAAATTTAATGGAGCAAAAAAGGCAACCCTAAATCTGCCAAGCGCAACTGCGGGTAATGACTGCCACAGTTTTAGAGACCCCCCGCTAAACTTGCACATTTCGAAACTCACACCATG
ACACCGGCACCACTTTGTCTTTTCATGCCTATTTCAAACTGAAAGTGTGTCACAGCCACAGTTTCCCCAAATAAGAAGCCAGCTGGCACTGCTAGTGATGGTGATACAAGCTCCCAACAC
TACAGTCTTCCCCCGAGTACAACGTACGGTCATTATAGCTGAATTTGGGGTATCTTTCCGTGTAAATTCAGCTATAATGACCGTACGTTGTGTTCGGAGGAAGACTGTAGCAGTCCACCG
CAGGCTCCAATCTATTGGTGGGGAGCAGCCCCTGCTGGAAATCGGGTCCAGCGTCCCTTGTACATAATAACTGAGAAGTGCTGAGAGTTTGAGCCTGGTTGAGTAGTCTGTGTTCGCCTG
CAGCCAGCCTCCTCGGCCCACAAATGGCCGCCAGATTCCTTCCCATTGTCCTAGCTGGTTAAACATCTTGCTCCCTGGCAAGACCGACCTAAAGTTCAGAGTCCTTGTTGGTTTATATCT
TCAACTTTCTGGCAGGTCTCACTGTCGCATGGTTTACGGCCACGTGGTGCGGCCCTTGCCGTCAGATCACTCCGGTGGTGACTAAACTCAACAACGATTACCCACTTGTGAAGTTCTTGA
AG
AGGTACGTTTTGAGCCTCCTTCAACCCCCTTCCACCCCCGAACCCTGCACCAATCATCTCGCCTGTTTCCTCGTTTTTCCCGTGTGCCCCCCTCGCCCCTTGTATGATCTACATGCTA
GCTGTGCATGTGCCTCTTCATCTAAATTTAGACCACAAGAGCTTTATGAGCCTCTTCAAGATGGAATCGGATTCAGCTACTGAAACCCTGGCATTATCCTTGAGTGAGAAGGCAAACTTC
GTTCTTGAGCCCAAAACAAAAAAAAGAAAGCTGAGAAGTAAAAAATGCCCCATCCCAAGACCTTGATCTGCGGTTTTAGCCCCTCCTGACAAATACATCAAAAAGGCCTTGGCGGACATC
TGAAAAACCCCTGCAGTCATCATCGTCGATCCCAGGTTGTGGTGTGTTCAAGAGTGTTTTTGTGCATGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGATTTGGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCCAATAGTTACATAGGGT
GCTTCTGCAGGTTGGCATCCAATCCATCTTAAAAGTAGACAAGCTGACAGAAATAATGCAAAAAGCTTTTGAGAAACGGGTTTACATGCTAAGTTTAGCCTTTCCATCTGATGTGTAACC
GCCATTTCGGTACATTTGAGATAAATATTTTTAATGCATGAAATTGAAATTTGCTTTTCAGCCTTTTAGGGGTATTTGTATGGGGTAGGCTGGAAGTTGTACTCTCTCTCTCTCTCTCTC
TCTCGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCACCCACTCACTCCAAAAAATAGTGAAGTCTCAAGTTTAGCGAAATG
GCTGTTTTTTTTTTCCCTTTTTTGCCCGCAGATTGACGTTGATGAGAATCAAGATCTTGCGCTCTCGGAGGGCATACAATCCGTGCCAACCTTTCGATTCATCAAGGCTGGCCGGCAGGT
TTCTGAGATCAAAGGTGCAAATGCTCTTTCTCTAGAGGCAACTGTCAAGATGTGGGCGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCAGAATGCCGCGTAGTGCCTGCTTCCCGGCCGCTTCGGTACCATGTTCCTCGAACGGCAGGATGGTGCGTTGCCTGCGCACTGCTTGCCTATTCTCCATGGCTGAGGCCTTTGACC
AGCAAATGCAGGAAGAGGATGCTGCTAGGCAGCGACAACCGCAAGAAGAGGAAGAACAAGGCCACCCGCAGGAAGCAGCACATCGTCAAGCCCCTACAAGAGGCTACTGAACTGGTGGAG
GCTGAACACATGGCACTGGGGGAATCGCTTACCATAGAGGATTCCCACT
GTCTCACTGTCGCATGGTTTACGGCCACGTGGTGCGGCCCTTGCCGTCAGATCACTCCGGTGGTGACTAAA
CTCAACAACGATTACCCACTTGTGAAGTTCTTGAAG
ATTGACGTTGATGAGAATCAAGATCTTGCGCTCTCGGAGGGCATACAATCCGTGCCAACCTTTCGATTCATCAAGGCTGGCCGG
CAGGTTTCTGAGATCAAAGGTGCAAATGCTCTTTCTCTAGAGGCAACTGTCAAGATGTGGGCGTGA

Retrieve as FASTA