RedOxiBase: View Perox 14484

Entry information : HaLilium02HanXRQChr05g0156071

Entry ID	14484
Creation	2017-11-03 (Christophe Dunand)
Last sequence changes	2017-11-03 (Christophe Dunand)
Sequence status	N/D
Reviewer	Not yet reviewed
Last annotation changes	2017-11-23 (Catherine Mathe (Scipio))

Peroxidase information: HaLilium02HanXRQChr05g0156071

Name

HaLilium02HanXRQChr05g0156071

Class

Thioredoxin Type Lilium [Orthogroup: Lilium004]

Taxonomy

Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus

Organism

Helianthus annuus (Sunflower) [TaxId: 4232 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	HaLilium02 start..stop	S start..stop
ThasLilium03-2	235	6e-78	30..243	42..245
HaLilium05	231	4e-76	12..218	19..233
AtLilium03	229	8e-76	65..219	68..222
HaLilium01	229	1e-75	63..218	77..232

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	192028816..192029001	186	N° 2	192029112..192029294	183	N° 3	192029385..192029549	165	N° 4	192030252..192030452	201
join(192028816..192029001,192029112..192029294,192029385..192029549,192030252..1 92030452)

Literature and cross-references HaLilium02HanXRQChr05g0156071

DNA ref.	HanXRQ genome: HanXRQChr05 (192028816..192030452)

Protein sequence: HaLilium02HanXRQChr05g0156071

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	244 (325)
PWM (Da):	26831.7 (35039.7)
PI (pH):	8.55 (8.21)	Peptide Signal:	cut: 23 range:23-347

Sequence 406
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSLNSIILPGYLTSFKETLINPNGSLSSSVFPTDLTQRSQLFSDHKGLTSSSWNAKTPVLAHASICVSKSMRWWEKTLKPNMIEINSAQEFVDTLSNSGDRLVIVDFYSPGCGGCKALYPKICQLAESNPKAIFLQVNYEELKPMCQSLHIHVLPFFRFYKGHEGKICSFSCTVATIKKFKDALSKYKPDGCNLGPAKGLEESELLTLASIGQISYNLPLKSTEVDLDPKKMNPSSKNLLLA*

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCTTCATTAAACTCCATTATTTTGCCTGGTTATTTGACTTCTTTTAAAGAAACTTTAATAAACCCAAATGGGTCTCTTTCTTCTTCAGTTTTCCCCACTGATTTGACCCAAAGA
TCACAGCTTTTTTCAGATCACAAGGGTTTAACTTCAAGTTCTTGGAATGCCAAAACCCCTGTTCTTGTATGTTAAATATTATCATTTTTTTTCTTTTGTGAAATGGGGTTTGTGTTTAAA
GTTTTAAACATTATTTTGATTTCTGATAGAAATTTTCTATTTTCATGACTATACAGGCACATGCTTCAATATGTGTTAGCAAATCAATGAGATGGTGGGAAAAGACATTAAAGCCCAACA
TGATTGAGATCAATTCAGCCCAAGAGTTTGTGGATACACTATCAAATTCAGGGGATAGATTGGTCATTGTGGACTTTTATTCACCTGGTTGTGGTGGTTGTAAAGCTCTATATCCCAAGG
TATGAACTATTTAAAATCCTATCTTTTTTTTTTTCTCAAGATTTTAGTGATTATTTTTTTAATTGATTTATTTTTGGGTTTATAATCAGATCTGTCAATTAGCTGAGTCAAACCCTAAAG
CAATTTTCCTCCAAGTGAACTATGAAGAACTCAAACCCATGTGTCAATCTCTCCATATTCATGTTCTGCCATTTTTTAGATTCTACAAAGGTCATGAGGGCAAGATTTGCAGCTTTAGCT
GCACTGTTGCAACTGTAAGTTTTTTTTTTTTTTTTTTTTCATTTTAATTTTGAATGCAATGTTGAAATGCTTAGACTTGAGCTATATTAAATTAAATGTCAAAAAAAAAAAAAAAAGATT
TTCAAGGTTGAATGGATCAATTGGGCAAACATTAGTTGTAAACTTGTAATGTATACAAGCTTTTGAATTTGTTAATTGAAAAGAATAAGATTATAAGTACAATAATAGATTTTTTTATTG
TCATATTGGATATATTTATAATTTATAATTTTTTATATAATTTAAGACAGTTAAAAAGTTGTGGGTTCAGTGGCGAAGCTTGAGATTTCCGACCGGTGGTCGAAAACGTATATACACACA
AATTTCTATAAAACCGGGGGGTCAAAAACTTGTATACCTAAAAATTTCTATACGAAAACTATATATTTTTCACCACTGAGAGAAAAGTTCGGGGGGTCGGTCCCCCTCCCACCCCTACTA
TGCTACGCCCATGCGTGGGTTGATTCATCCCATGTTAACTGAGGAGGTTAATGGGCCGGGTATTGGTAATCTTGTCAGATTGGTAATCCTGTCGGGCTTATCCATCGACTGGTCCCATAC
CCGAACACCCTATTTATCCAAACCTTTTTTGTTTTAATATGTTAATGATACCTCTAATTTCTGTTATCCAAAAAGAATGATGACAAAAGTTAACAAGAATAATTGGTTAATGGCAGATCA
AGAAATTCAAGGATGCATTATCAAAGTACAAGCCAGATGGATGTAATCTTGGTCCAGCTAAAGGATTAGAAGAGTCTGAGCTGTTGACTTTAGCTTCAATTGGTCAAATTTCTTATAATT
TGCCATTAAAGTCAACTGAGGTTGATTTGGATCCTAAGAAAATGAACCCATCCAGCAAGAATTTGCTTCTTGCATAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GGTTCACAAC TATTTTGTGA GTGGATAAAG TTGAATTTAA TGAAACTGAA AACCCTACAT AAAACCAAAA AAAGATCCCA CCAAACCTGT TACTTTTCCT TTTCCCAAAA CCTTCATCCA CACTTCTCTC TCATCAAAGG AACACATCTT TTGTTGGTTT TTTGGTCTTC TTGCACCAAG TTATGTTATT TGGATTCTTG TTAACTGGAT TACATAAAAC CTCAATTGGT CTTTTGTCTT GCTTCACATC ATACTAACAA AAAAAGGGTT CTTGCCTTCT TGGTGCATTC TTCAATCTTT TATCTTTAAC ATCTCTCCAA TGGCTTCTTC ATTAAACTCC ATTATTTTGC CTGGTTATTT GACTTCTTTT AAAGAAACTT TAATAAACCC AAATGGGTCT CTTTCTTCTT CAGTTTTCCC CACTGATTTG ACCCAAAGAT CACAGCTTTT TTCAGATCAC AAGGGTTTAA CTTCAAGTTC TTGGAATGCC AAAACCCCTG TTCTTGCACA TGCTTCAATA TGTGTTAGCA AATCAATGAG ATGGTGGGAA AAGACATTAA AGCCCAACAT GATTGAGATC AATTCAGCCC AAGAGTTTGT GGATACACTA TCAAATTCAG GGGATAGATT GGTCATTGTG GACTTTTATT CACCTGGTTG TGGTGGTTGT AAAGCTCTAT ATCCCAAGAT CTGTCAATTA GCTGAGTCAA ACCCTAAAGC AATTTTCCTC CAAGTGAACT ATGAAGAACT CAAACCCATG TGTCAATCTC TCCATATTCA TGTTCTGCCA TTTTTTAGAT TCTACAAAGG TCATGAGGGC AAGATTTGCA GCTTTAGCTG CACTGTTGCA ACTATCAAGA AATTCAAGGA TGCATTATCA AAGTACAAGC CAGATGGATG TAATCTTGGT CCAGCTAAAG GATTAGAAGA GTCTGAGCTG TTGACTTTAG CTTCAATTGG TCAAATTTCT TATAATTTGC CATTAAAGTC AACTGAGGTT GATTTGGATC CTAAGAAAAT GAACCCATCC AGCAAGAATT TGCTTCTTGC ATAGGTTTTA GATGCTAGTT TGAAAACAGT GTCTTTGCAA GAATTTACTT GTTTAGGTTT TAGATTAATC TATCCGAACC CTAATGGGTC GGGTCGGTGG GCATTTAAGT GGGCTTGCTA TATTTTTAGT TGATGGACAA GCCCTACTTG TTTGATGTTT GTTCAGTTTA TTATTGAAGA TTGTAATTTG TGATTGACTA GACCCGTGCG TGTTGCGGCG CGGGTACATC ATAAACATCG AATCGATTAG TTCAATCGTT ATGCGATGCG TTAACCATAT GAAAACACGT ATTTCGACGT ATTCAATTGA ACTCAATGCA ACCTATATAA GCATTGCGAT TGTATCAAAA TGTAAAGTAA ATCGAGTTTA TAACGTACAA TCATAACGTA TTATATGTGA CCCAACTCGT ACATAGAAAA TGTAACGGGT ATAAAAGGAA AAACTGCCAC GTGTAATCAA AAGCGATTAA TTAGAGCTTT TGAATCAAAA AACCACAACT TAACTCCACT
CGGTTCGAAA CAAAATTTCG TAACATTCAT AAAATAGGCA TAAAAATATA TTATATATGA CCTGACTCGT TTCCTAAAAA AGTTTAGGTC GAATCGTTGA CCAATTCTAA TTTATACCA

Retrieve as FASTA