View Redoxidase 14488

Entry information : HaLilium06HanXRQChr14g0439631

Entry ID	14488
Creation	2017-11-03 (Christophe Dunand)
Last sequence changes	2017-11-03 (Christophe Dunand)
Sequence status	N/D
Reviewer	Not yet reviewed
Last annotation changes	2017-11-23 (Catherine Mathe (Scipio))

Peroxidase information: HaLilium06HanXRQChr14g0439631

Name

HaLilium06HanXRQChr14g0439631

Class

Thioredoxin Type Lilium [Orthogroup: Lilium003]

Taxonomy

Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus

Organism

Helianthus annuus (Sunflower) [TaxId: 4232 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	HaLilium06 start..stop	S start..stop
HaLilium03	296	1.66e-103	15..219	1..201
ThasLilium06	223	1.83e-74	80..215	76..211
AtLilium06	219	9.8e-73	87..215	86..214
ThasTrxH01	62	0.000000000000501	114..215	21..114

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '14488' 'join(96066109..96066597,96066886..96066939,96067039..96067164)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	96066109..96066597	487	N° 2	96066886..96066939	52	N° 3	96067039..96067164	124
join(96066109..96066597,96066886..96066939,96067039..96067164)

Literature and cross-references HaLilium06HanXRQChr14g0439631

DNA ref.	HanXRQ genome: HanXRQChr14 (96066109..96067164)

Protein sequence: HaLilium06HanXRQChr14g0439631

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	222
PWM (Da):	25336.85
PI (pH):	7.38

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSWSIQTSLQKHRTMIHQTLISFPKVNIQNTQTEFKNPSTFPDKCSMRACRLKEQTRCDNRGAVSHYRRLQIHSQRVECVANGDPQELLDEDEELCPVECVREIKKDEELLTVLEKAKKA
NTLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDEEAAVIFLKHNVIDEYDEQSDIAERLRIKTVPLFHFYKNGILLEAFPTRDKERIKAAIEKYTAPAPAPAA*

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTTGGTCCATACAAACTTCATTGCAGAAGCATAGAACCATGATTCACCAAACCCTGATAAGTTTTCCTAAAGTTAACATTCAGAACACGCAAACCGAGTTTAAAAACCCGTCAACT
TTTCCGGATAAATGTTCCATGAGAGCATGCCGCTTGAAGGAACAAACTCGGTGTGATAACAGAGGCGCGGTTTCACACTATCGTAGGCTGCAGATCCACTCTCAGCGAGTCGAGTGTGTG
GCGAACGGGGACCCACAAGAGTTGTTAGATGAAGATGAGGAGCTCTGCCCCGTCGAATGTGTCAGAGAAATCAAGAAGGATGAGGAACTACTCACAGTTCTAGAGAAAGCGAAAAAGGCT
AATACATTGGTTGTGGTCGACTTCTATCGCACTTCATGTGGTAGTTGCAAGTATATTGAACAGGGTTTCGCAAAATTGTGCAAAGGGTCAGGTGATGAGGAGGCTGCAGTTATCTTCTTA
AAGCATAATATGTGAGTTTTGCTCATCTCTATTACTGTTTTGCTTAAACAATGTCCGCGGGTGTTTTATATCTTTATGATCATGTCAGAACTATTTCCCGCATATAGCCATGAGATATGC
CAAGTTTTAGTTGCGTATCTACTTTTATTCGCGTATATGCCTGATAATAACACAAAATGATTCTACAAATGCATACTATGCTGATAAGATTCGAATATCTACCTTCTTGTACTCGAGTGT
CCTTAAAGTAACTATTTTATCTACTCGTGTAACTCATGGTTTTGTGATACATTCTGCAGGTGATTGATGAATATGATGAGCAATCGGATATAGCAGAACGACTTCGAATTAAGAGGTGCT
ATATATTTAACATGTTCAAAATTCCTTCCTCCAAAGTCCAAATATTATTTTTCTCGGTTATTCTGTAATCTGAGTTTATTTTCAATTATAACAGACGGTTCCTCTCTTTCATTTCTATAA
AAATGGGATCCTATTGGAAGCTTTTCCTACCAGAGATAAGGAACGGATTAAAGCGGCTATAGAAAAATATACAGCCCCTGCACCGGCTCCTGCTGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

AAACAATATT CAAAATTATG ATTTTTCAAC TGTGGAATAT TGGAGCGAGT GGCTGATATG AGCTGCAGAA GTGTGCGGTG ATGAATGTAA CTGACTTTTG CTCTCATTTT ATCGTCAACA ACAACTGCTC CGCCGTCGCC ACCGCTTCCC TCCGCCGCCT AACAGTTGAT GTTTCAAAAA TAAGTTGTGC ATTATCCTTG GTTTTTGCAA GATACAAGGG GTGAAGAACA TCTGCCACCT CTCTTCTCTG GGTTTTTAGC ACAGTAAATC CAATGTCTTG GTCCATACAA ACTTCATTGC AGAAGCATAG AACCATGATT CACCAAACCC TGATAAGTTT TCCTAAAGTT AACATTCAGA ACACGCAAAC CGAGTTTAAA AACCCGTCAA CTTTTCCGGA TAAATGTTCC ATGAGAGCAT GCCGCTTGAA GGAACAAACT CGGTGTGATA ACAGAGGCGC GGTTTCACAC TATCGTAGGC TGCAGATCCA CTCTCAGCGA GTCGAGTGTG TGGCGAACGG GGACCCACAA GAGTTGTTAG ATGAAGATGA GGAGCTCTGC CCCGTCGAAT GTGTCAGAGA AATCAAGAAG GATGAGGAAC TACTCACAGT TCTAGAGAAA GCGAAAAAGG CTAATACATT GGTTGTGGTC GACTTCTATC GCACTTCATG TGGTAGTTGC AAGTATATTG AACAGGGTTT CGCAAAATTG TGCAAAGGGT CAGGTGATGA GGAGGCTGCA GTTATCTTCT TAAAGCATAA TGTGATTGAT GAATATGATG AGCAATCGGA TATAGCAGAA CGACTTCGAA TTAAGACGGT TCCTCTCTTT CATTTCTATA AAAATGGGAT CCTATTGGAA GCTTTTCCTA CCAGAGATAA GGAACGGATT AAAGCGGCTA TAGAAAAATA TACAGCCCCT GCACCGGCTC CTGCTGCTTA ATAAAACAAG ACGATCCGGT AATGTGCCTA AATTTTGCCA CCTGCAGATC ATAGTTTAGA TACAACTTGC ATGGTGTTAT ATGTAATTCA ATCCATGCTA ATGTTTTTAA TTTTGTAGGC TACAAAATAA AGAATGAAAA
ATTAATCATT ATGTATAAAT GAATAAAACT ATATATTTGT

Retrieve as FASTA