Entry information : LsaPrx06
Entry ID 1456
Creation 2006-08-12 (Christophe Dunand)
Last sequence changes 2014-02-25 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-02-25 (Christophe Dunand)
Peroxidase information: LsaPrx06
Name LsaPrx06
Class Class III peroxidase    [Orthogroup: Prx019]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Lactuca
Organism Lactuca sativa (Lettuce)    [TaxId: 4236 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LsaPrx06
start..stop
S start..stop
LvPrx06 605 0 1..302 1..302
HaPrx80 593 0 10..337 38..365
LsPrx06 542 0 2..270 1..269
CsPrx06 524 0 6..318 4..316
Literature and cross-references LsaPrx06
Literature Kozik,A., Michelmore,R.W., Knapp,S., Matvienko,M., Rieseberg,L., Lin,H., van Damme,M., Lavelle,D., Chevalier,P., Ziegle,J., Ellison ,P., Kolkman,J., Slabaugh,M.S., Livingston,K., Zhou,Y., Lai,Z., Church,S., Jackson,L. and Bradford,K.
Lettuce and Sunflower ESTs from the Compositae Genome Project
Unpublished (2002)

DNA ref. GenBank:   AFSA01150879.1 (232..1900)
Protein sequence: LsaPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338 (321)
PWM (Da):   %s   37323.77 (35521.8)  
PI (pH):   %s   5.5 (5.50) Peptide Signal:   %s   cut: 18 range:18-338
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MCLLSFVLCL LPVVISAAAP PLQPGYYAKS CPNAELIVRD VMKKAMIREP RSGASVMRLQ FHDCFVNGCD GSLLLDDTPT MLGEKLSLSN INSLRSYEVV DEIKEALESA CPRIVSCADI  IIMASRDAVA LSGGPDWEVK LGRKDSLTAS QKDSDDIMPS PRANASSLID LFARFHLSVK DLVSLSGSHS IGNGRCFSIV FRLYNQSGTG RPDPTIEPKF RKKLDKLCPL GGDGNVTGDL 
DFTPHVFDNQ YFKDLVNGRG FLNSDETLFT FPETRGYVRR YSEDESEFFR DFVDGMIKMG DLQSGRPGEI RRNCRVVNDP PQVEVVVGEF RDRKILSK 

Retrieve as FASTA  
Remarks Complete sequence from genomic (intron 1) and 2 EST sequences (TIGR only salinas). Sequencing error corrected by the PeroxiBase team at position "LSVKDLR" (extra cytidine removed). 5' and 3' ends are missing.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTGTCTTC TCTCCTTCGT CTTGTGTCTA CTTCCGGTGG TCATCTCCGC CGCAGCGCCA CCACTCCAGC CGGGATACTA CGCCAAATCC TGCCCAAATG CAGAGCTCAT CGTCAGAGAT  GTGATGAAGA AGGCGATGAT CAGAGAACCC AGAAGTGGAG CTTCTGTCAT GCGACTTCAA TTCCATGATT GTTTTGTTAA CGTAAGCAAT CTTTGAGCTT TATTATGTTG TTGTAATTAA  GAATTTGAGA TAATTTTAAG GAAAATCGAA GATAATTTGA GGGTTGTTGA AATTATTTTG ACCAGGGATG TGACGGGTCG CTGTTGTTGG ATGATACCCC GACCATGCTT GGGGAGAAAC  TCTCGTTGTC CAACATAAAT TCGTTGAGAT CTTACGAGGT TGTCGATGAA ATTAAGGAAG CTCTTGAGTC GGCCTGCCCT CGTATTGTTT CTTGTGCAGA TATCATTATC ATGGCCTCTA  GAGATGCTGT TGCTCTGGTA AATTTTTATT TTATTATTAG TTATATAGTT ATATATTTTG GATGTACTAA AATCATAAAG TAATGTGTTT TAGCACAAAA GAAATCTTCT CATTTATTTA  GAAAATGATT TTTTTTTGCT AATTATCTTT TTCAGTAAAA TTATTTTATA GATTTGACTC AAGCTCAACT ACGGGAATGT TTTGTTTCTT ATTTATTTCG TCAAATATTT TTAAGAATAT  GAATAATCTT TTCACATTTT CCTTTTGCAA AATCATATAT ACTTTATTTT CACAAATATT AACAATGGAG TCAAATAATA TATATATCTT TTTTGCATGA CTTATCACTT ATCAGAAAGA  AAAAATCAAA ATGAATTTTT ATTCTATGAT AGTTTCTCAA AAAGTAATCA TTTAATGTGT TTTTAATATA TTGATTTTTA AGCCAAAATT AAATATTACC AAAAAAAAAT ATTTAATTAT  TATATGAACA GAGTGGAGGT CCAGATTGGG AAGTGAAATT GGGAAGAAAA GACAGTTTAA CGGCAAGCCA AAAAGATTCC GACGACATAA TGCCGAGTCC AAGAGCCAAC GCAAGTTCTC  TCATCGATCT TTTCGCCAGA TTCGATCTCT CAGTGAAAGA TCTCGTGTCC CTTTCCGGTT CTCACTCCAT CGGAAACGGT CGTTGCTTCT CCATCGTCTT CCGGCTATAC AACCAGTCAG  GAACCGGCCG CCCAGATCCC ACCATCGAGC CTAAGTTCCG GAAAAAGTTA GACAAGCTTT GCCCTCTTGG AGGAGACGGG AATGTCACCG GCGATTTGGA CTTCACGCCT CATGTTTTTG  ATAATCAGTA CTTTAAAGAT TTGGTGAACG GAAGAGGGTT TCTTAATTCC GATGAAACGT TGTTTACTTT TCCGGAAACG AGAGGGTATG TGAGAAGGTA TAGTGAGGAT GAATCCGAGT  TTTTTAGGGA TTTTGTCGAT GGGATGATAA AGATGGGGGA CTTGCAGTCA GGGCGGCCGG GGGAGATTCG GAGGAATTGT AGGGTGGTTA ATGACCCGCC GCAGGTAGAG GTGGTGGTCG 
GGGAATTCAG GGATAGGAAA ATCTTGAGCA AGTGA 

Retrieve as FASTA