Entry information : CagraPrx47 (Cagra.1036s0039)
Entry ID 14893
Creation 2018-03-01 (Christophe Dunand)
Last sequence changes 2018-03-01 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-03-02 (Christophe Dunand)
Peroxidase information: CagraPrx47 (Cagra.1036s0039)
Name (synonym) CagraPrx47 (Cagra.1036s0039)
Class Class III peroxidase     [Orthogroup: Prx048]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella
Organism Capsella grandiflora    [TaxId: 264402 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CagraPrx47
start..stop
S start..stop
CrubPrx46 519 0 1..253 78..330
AtPrx56 483 9e-175 1..253 78..329
BstrPrx35 481 5e-174 1..253 78..329
AlyPrx56-1 481 6e-174 1..253 78..329
Literature and cross-references CagraPrx47 (Cagra.1036s0039)
Protein sequence: CagraPrx47 (Cagra.1036s0039)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   253
PWM (Da):   %s   27566.9  
PI (pH):   %s   6.52
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCEGSVLLEL KNKQDEKNSI PNLTLRGFEI IDNAKAALEK ECPGIVSCSD VLAIVARDAM VALNGPSWEV ETGRRDGIVT NISEALLNLP SPFANISSLI TQFQSKGLDN KDLVVLSGGH  TIGNGHCPQI TNRLYNFTGK GDSDPNLDTK YAAALRKKCK PTDTTTALEM DPGSFKTFDG SYFKLVSQRR GLFQSDAALL DNQETKSYLL KQMNSDGYST FFEDFGVSMV KMGRIGVLTG 
EVGQVRQKCR MVN* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 5'end is missing due to N in the sequence.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGATGTGAAG GGTCAGTCTT GCTAGAGCTA AAGAACAAAC AAGATGAGAA AAACTCAATC CCTAACCTCA CCCTTAGAGG GTTTGAGATC ATAGACAATG CAAAGGCAGC TCTAGAAAAG  GAGTGTCCGG GCATTGTTTC TTGCTCTGAT GTGTTGGCTA TTGTCGCTAG GGATGCAATG GTTGCGGTAA GTATAAAGCT TTTTAGTATC AAGCGATACT GATCTAATAT TTGGTCGAAC  TCACGGTATC TTTAGTACAC ACCCTCCTTT ACATGGTGAT TATAAACTCC ATAAATTAGG TTGGACGCAC TCTTTTTTTT TTTTCTTTTA ATGCTACAAA ATGCACTTGA CGTAAACTCC  GAGAGACTAC TAGTTCAGGT TTACGTTTGA GATTTTCTGA ATGGTCATAA AGAAAATCCA TAGAATCTGT TATATGTGAT ATGTTGGATT TTTAAGACTT GTGATATACA AATTAATATA  TATTCAGCTC AATGGACCGT CATGGGAGGT TGAAACAGGA AGAAGAGACG GTATAGTTAC AAACATCAGT GAGGCCCTAT TAAACCTACC ATCACCATTT GCTAATATCA GTAGTCTCAT  CACTCAATTC CAATCCAAAG GCCTGGACAA TAAAGACCTC GTTGTGCTTT CAGGTATATG TGTTATAGAA TCAGAAAACT CATTAGTTAT GCTTGACCTG AAAGTTAAAA AAGCAGTCTC  CAATCAATTT TTTCTTAGAT TGAAAAATCC CATATATACC TTATTCAGAT TTTGAATCGT AGCAAGAACA ACTCATTCAC GTTTTCGATA TTTTACAACC TTTTAAATGC TAAAAATATT  ATAATTTCAT TCTCATTTTC CTCCTTTTTC CAAGCAATCT TTGGTTATTT TAGACTTTTA AAATAGCAAC TAGCAAGAAT ACTCTGGTCT TCTATGATAT AATAAAAATA AATTCATTCT  CAACTTATTT TTATTTACAT TTTGATAGGT GGACACACAA TAGGGAATGG ACACTGCCCT CAAATCACAA ACCGGCTCTA CAATTTCACC GGGAAAGGAG ATAGTGATCC AAACTTAGAC  ACGAAATACG CAGCCGCCCT TAGAAAAAAA TGCAAGCCAA CTGATACCAC AACGGCTTTA GAAATGGATC CAGGAAGCTT TAAAACGTTT GACGGGAGCT ACTTCAAGCT TGTGTCTCAA  AGAAGAGGGT TGTTTCAATC TGATGCAGCT CTTTTAGACA ATCAAGAAAC TAAGTCTTAT CTTCTCAAGC AAATGAATAG TGACGGGTAC TCTACTTTCT TTGAAGACTT TGGTGTTTCT 
ATGGTAAAGA TGGGTCGGAT TGGGGTCTTA ACAGGTGAAG TTGGACAAGT TCGCCAGAAA TGCAGAATGG TTAACTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGATGTGAAG GGTCAGTCTT GCTAGAGCTA AAGAACAAAC AAGATGAGAA AAACTCAATC CCTAACCTCA CCCTTAGAGG GTTTGAGATC ATAGACAATG CAAAGGCAGC TCTAGAAAAG  GAGTGTCCGG GCATTGTTTC TTGCTCTGAT GTGTTGGCTA TTGTCGCTAG GGATGCAATG GTTGCGCTCA ATGGACCGTC ATGGGAGGTT GAAACAGGAA GAAGAGACGG TATAGTTACA  AACATCAGTG AGGCCCTATT AAACCTACCA TCACCATTTG CTAATATCAG TAGTCTCATC ACTCAATTCC AATCCAAAGG CCTGGACAAT AAAGACCTCG TTGTGCTTTC AGGTGGACAC  ACAATAGGGA ATGGACACTG CCCTCAAATC ACAAACCGGC TCTACAATTT CACCGGGAAA GGAGATAGTG ATCCAAACTT AGACACGAAA TACGCAGCCG CCCTTAGAAA AAAATGCAAG  CCAACTGATA CCACAACGGC TTTAGAAATG GATCCAGGAA GCTTTAAAAC GTTTGACGGG AGCTACTTCA AGCTTGTGTC TCAAAGAAGA GGGTTGTTTC AATCTGATGC AGCTCTTTTA  GACAATCAAG AAACTAAGTC TTATCTTCTC AAGCAAATGA ATAGTGACGG GTACTCTACT TTCTTTGAAG ACTTTGGTGT TTCTATGGTA AAGATGGGTC GGATTGGGGT CTTAACAGGT 
GAAGTTGGAC AAGTTCGCCA GAAATGCAGA ATGGTTAACT AA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGATGTGAAG GGTCAGTCTT GCTAGAGCTA AAGAACAAAC AAGATGAGAA AAACTCAATC CCTAACCTCA CCCTTAGAGG GTTTGAGATC ATAGACAATG CAAAGGCAGC TCTAGAAAAG  GAGTGTCCGG GCATTGTTTC TTGCTCTGAT GTGTTGGCTA TTGTCGCTAG GGATGCAATG GTTGCGCTCA ATGGACCGTC ATGGGAGGTT GAAACAGGAA GAAGAGACGG TATAGTTACA  AACATCAGTG AGGCCCTATT AAACCTACCA TCACCATTTG CTAATATCAG TAGTCTCATC ACTCAATTCC AATCCAAAGG CCTGGACAAT AAAGACCTCG TTGTGCTTTC AGGTGGACAC  ACAATAGGGA ATGGACACTG CCCTCAAATC ACAAACCGGC TCTACAATTT CACCGGGAAA GGAGATAGTG ATCCAAACTT AGACACGAAA TACGCAGCCG CCCTTAGAAA AAAATGCAAG  CCAACTGATA CCACAACGGC TTTAGAAATG GATCCAGGAA GCTTTAAAAC GTTTGACGGG AGCTACTTCA AGCTTGTGTC TCAAAGAAGA GGGTTGTTTC AATCTGATGC AGCTCTTTTA  GACAATCAAG AAACTAAGTC TTATCTTCTC AAGCAAATGA ATAGTGACGG GTACTCTACT TTCTTTGAAG ACTTTGGTGT TTCTATGGTA AAGATGGGTC GGATTGGGGT CTTAACAGGT 
GAAGTTGGAC AAGTTCGCCA GAAATGCAGA ATGGTTAACT AA 

Retrieve as FASTA