Entry information : CagraPrx48 (Cagra.1232s0001)
Entry ID 14894
Creation 2018-03-01 (Christophe Dunand)
Last sequence changes 2018-03-01 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-03-02 (Christophe Dunand)
Peroxidase information: CagraPrx48 (Cagra.1232s0001)
Name (synonym) CagraPrx48 (Cagra.1232s0001)
Class Class III peroxidase     [Orthogroup: Prx015]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella
Organism Capsella grandiflora    [TaxId: 264402 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CagraPrx48
start..stop
S start..stop
CrubPrx57 504 0 1..270 1..265
AhalPrx33 466 4e-168 3..270 1..269
CrubPrx73 466 9e-168 23..270 24..272
BstrPrx06 463 1e-166 1..270 1..271
Literature and cross-references CagraPrx48 (Cagra.1232s0001)
Protein sequence: CagraPrx48 (Cagra.1232s0001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   270 (245)
PWM (Da):   %s   29355.96 (26634.4)  
PI (pH):   %s   7.77 (7.39) Peptide Signal:   %s   cut: 26 range:26-270
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MALVFKTNLS LLLLSLFLTF NLASAQLRRN FYAGSCPNVE QIVRNAVQKK AQQSIITIPA TLRLYFHDCF VNGCDASVMI ASTDSNKAER DHEDNISLAG DGFDTVNKAK EALDAVPNCR  NKVSCADILT MATRDVVNIA GGPKYDVELG RLDGLSSTAA SVEGNLPHPT AGVNQLTSLF AKNGLSLNDM IALSGAHTIG FAHCTKVFNR IYSFNKTTKV DPTINKEFVT ELKRSCPQDI 
DPNVVINIDP TPRQFDNVYY KNLQQGKGLF 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 3'end is missing due to scaffold border.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTTGAAGCC CTATATAACG ATGAACTCTC TCCATTGAGT GAAGATAATT TAAAAACATG GCTTTGGTGT TCAAAACGAA TCTCTCGTTG CTTCTTCTCT CTCTTTTTCT AACCTTCAAC  CTCGCCTCCG CTCAACTCCG CCGCAACTTC TACGCGGGAA GTTGCCCTAA CGTCGAACAA ATTGTCAGAA ACGCCGTTCA GAAAAAAGCT CAGCAAAGTA TCATCACCAT TCCCGCCACT  CTACGCCTAT ATTTCCATGA TTGCTTCGTC AATGTAAAAC ATATACTTTT CTTGATGATT TCTTCTCCTG CATGCGTATA TTTTATCTCA TTATTTTGTC TAATTTATGG ATTTATAGGG  ATGCGATGCA TCAGTGATGA TAGCGTCGAC TGATAGTAAT AAGGCGGAGA GAGATCATGA GGATAATATA TCGTTAGCCG GAGATGGATT CGATACCGTC AATAAAGCTA AAGAAGCTCT  CGATGCCGTC CCAAATTGTC GTAACAAAGT TTCTTGCGCC GATATACTCA CGATGGCCAC TCGTGACGTT GTCAATATTG TTAGTTACTC ATACGTAACA CTTTTTTTTC TTAAATTAAA  ACATTCTTGT AAGTTACTAA TTTAAATTCA AATATAGGCG GGTGGACCAA AATACGACGT GGAATTGGGA AGGCTAGATG GTCTATCGTC GACGGCCGCT AGCGTCGAAG GGAATTTGCC  GCATCCGACG GCCGGTGTTA ACCAACTCAC TTCGCTTTTC GCCAAAAACG GCCTTAGCCT TAACGACATG ATCGCTCTCT CCGGTAAGTA TTGAACTACT TCTCGATCAA GAATAGAATC  TTTCTTTTTT GAAACAGAAC CAACATTACT ATCTTTTGGA CAAAACTTAG TTAGTAGTGA CTTAAAATTG ATAATATTTC GGTTTAGCTT GAGCTATATA CCCGAGTTTA TTTAGGATTT  AAGTTGGTTT TATATGTGTT ATGTTTAATT TCTATTATTA CTCGATGTGA CATCTTAGAT ACCCACTAAT CTATGTTCGG GTACTAATTT AAATTTTGTT CCATCTTAAA AAAAAACAGG  GGCGCACACA ATAGGATTCG CGCATTGCAC CAAAGTGTTC AATCGGATAT ACAGTTTCAA CAAGACAACT AAAGTGGATC CCACAATCAA CAAAGAGTTC GTGACAGAGC TAAAAAGGTC 
GTGTCCTCAA GACATAGATC CAAATGTAGT TATAAACATA GATCCAACAC CAAGACAGTT CGACAACGTT TACTACAAGA ACTTGCAGCA AGGAAAAGGA TTGTTC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTTGG TGTTCAAAAC GAATCTCTCG TTGCTTCTTC TCTCTCTTTT TCTAACCTTC AACCTCGCCT CCGCTCAACT CCGCCGCAAC TTCTACGCGG GAAGTTGCCC TAACGTCGAA  CAAATTGTCA GAAACGCCGT TCAGAAAAAA GCTCAGCAAA GTATCATCAC CATTCCCGCC ACTCTACGCC TATATTTCCA TGATTGCTTC GTCAATGGAT GCGATGCATC AGTGATGATA  GCGTCGACTG ATAGTAATAA GGCGGAGAGA GATCATGAGG ATAATATATC GTTAGCCGGA GATGGATTCG ATACCGTCAA TAAAGCTAAA GAAGCTCTCG ATGCCGTCCC AAATTGTCGT  AACAAAGTTT CTTGCGCCGA TATACTCACG ATGGCCACTC GTGACGTTGT CAATATTGCG GGTGGACCAA AATACGACGT GGAATTGGGA AGGCTAGATG GTCTATCGTC GACGGCCGCT  AGCGTCGAAG GGAATTTGCC GCATCCGACG GCCGGTGTTA ACCAACTCAC TTCGCTTTTC GCCAAAAACG GCCTTAGCCT TAACGACATG ATCGCTCTCT CCGGGGCGCA CACAATAGGA  TTCGCGCATT GCACCAAAGT GTTCAATCGG ATATACAGTT TCAACAAGAC AACTAAAGTG GATCCCACAA TCAACAAAGA GTTCGTGACA GAGCTAAAAA GGTCGTGTCC TCAAGACATA 
GATCCAAATG TAGTTATAAA CATAGATCCA ACACCAAGAC AGTTCGACAA CGTTTACTAC AAGAACTTGC AGCAAGGAAA AGGATTGTTC 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTTGAAGCC CTATATAACG ATGAACTCTC TCCATTGAGT GAAGATAATT TAAAAACATG GCTTTGGTGT TCAAAACGAA TCTCTCGTTG CTTCTTCTCT CTCTTTTTCT AACCTTCAAC  CTCGCCTCCG CTCAACTCCG CCGCAACTTC TACGCGGGAA GTTGCCCTAA CGTCGAACAA ATTGTCAGAA ACGCCGTTCA GAAAAAAGCT CAGCAAAGTA TCATCACCAT TCCCGCCACT  CTACGCCTAT ATTTCCATGA TTGCTTCGTC AATGGATGCG ATGCATCAGT GATGATAGCG TCGACTGATA GTAATAAGGC GGAGAGAGAT CATGAGGATA ATATATCGTT AGCCGGAGAT  GGATTCGATA CCGTCAATAA AGCTAAAGAA GCTCTCGATG CCGTCCCAAA TTGTCGTAAC AAAGTTTCTT GCGCCGATAT ACTCACGATG GCCACTCGTG ACGTTGTCAA TATTGCGGGT  GGACCAAAAT ACGACGTGGA ATTGGGAAGG CTAGATGGTC TATCGTCGAC GGCCGCTAGC GTCGAAGGGA ATTTGCCGCA TCCGACGGCC GGTGTTAACC AACTCACTTC GCTTTTCGCC  AAAAACGGCC TTAGCCTTAA CGACATGATC GCTCTCTCCG GGGCGCACAC AATAGGATTC GCGCATTGCA CCAAAGTGTT CAATCGGATA TACAGTTTCA ACAAGACAAC TAAAGTGGAT  CCCACAATCA ACAAAGAGTT CGTGACAGAG CTAAAAAGGT CGTGTCCTCA AGACATAGAT CCAAATGTAG TTATAAACAT AGATCCAACA CCAAGACAGT TCGACAACGT TTACTACAAG 
AACTTGCAGC AAGGAAAAGG ATTGTTC 

Retrieve as FASTA