Entry information : CagraPrx61 (Cagra.10957s0003)
Entry ID 14907
Creation 2018-03-01 (Christophe Dunand)
Last sequence changes 2018-03-01 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2018-03-02 (Christophe Dunand)
Peroxidase information: CagraPrx61 (Cagra.10957s0003)
Name (synonym) CagraPrx61 (Cagra.10957s0003)
Class Class III peroxidase     [Orthogroup: Prx015]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella
Organism Capsella grandiflora    [TaxId: 264402 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CagraPrx61
start..stop
S start..stop
CrubPrx73 350 4e-123 24..196 24..196
AhalPrx33 340 2e-119 6..196 3..193
BstrPrx06 339 7e-119 25..196 24..195
AtPrx50 338 8e-119 3..196 2..195
Literature and cross-references CagraPrx61 (Cagra.10957s0003)
Protein sequence: CagraPrx61 (Cagra.10957s0003)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   198 (172)
PWM (Da):   %s   21264.87 (18381.2)  
PI (pH):   %s   7.34 (6.25) Peptide Signal:   %s   cut: 27 range:27-198
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MALVNNKTNL LLLLLSLFLT LNLGSAQLRR DFYAGSCPNV EKIVRNAVQK KVQQTFTTIP ATLRLYFHDC FVNGCDASVM IASTDNNKAE KDHEENLSLA GDGFDTVIKA KEAIDAVANC 
RNKVSCADII TMATRDVVNL AGGPKYDVEL GRRDGLSSTA ASVGGKLPHP TDDVNQLTSL FAKNGLSLND MVALSGKC* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 3'end is missing due to N in the sequence (scaffold border).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTTTAAAACA TGGCTTTGGT GAATAATAAA ACGAATCTCT TGTTGCTTCT TCTCTCTCTT TTTCTAACAC TCAACCTCGG CTCCGCTCAA CTCCGTCGCG ATTTCTACGC CGGAAGTTGC  CCTAACGTCG AGAAAATCGT CAGAAACGCC GTTCAGAAAA AAGTCCAACA AACTTTCACC ACCATCCCCG CCACTCTCCG CCTCTATTTC CACGACTGCT TCGTCAATGT AAAACATATT  CTTTTCTTGA TAATTTTTTT GTTTCTTCTT GATCTTTAAC TTCTCTAGCG TAAATTTTAT TTTATTATTT TGTCTAATTT ATGGGTTGAC TGGTTAATAT GATAGGGGTG TGATGCATCA  GTGATGATAG CGTCAACTGA TAACAATAAG GCGGAGAAAG ATCACGAGGA AAATTTATCG TTGGCCGGAG ATGGATTCGA CACCGTCATT AAAGCTAAAG AAGCTATTGA TGCCGTCGCA  AATTGTCGTA ACAAAGTTTC TTGCGCCGAT ATTATCACGA TGGCCACTCG TGACGTCGTT AATCTTGTTA GTAACTCATT CTTAACTTAA TTTTATGTAA CAAGCGTGTT TTATTAAATT  AAAAACATTT TATTTTGTAA GTTAGTAAAT ATTAAATTCA ATATAGGCGG GTGGACCAAA ATACGACGTG GAATTGGGAA GGCGAGATGG ACTGTCGTCA ACGGCTGCTA GCGTCGGAGG 
GAAGTTGCCG CATCCGACGG ACGATGTCAA CCAACTCACT TCACTTTTCG CCAAAAATGG TCTTAGCCTT AACGACATGG TCGCTCTCTC CGGTAAGTGT TGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTTGG TGAATAATAA AACGAATCTC TTGTTGCTTC TTCTCTCTCT TTTTCTAACA CTCAACCTCG GCTCCGCTCA ACTCCGTCGC GATTTCTACG CCGGAAGTTG CCCTAACGTC  GAGAAAATCG TCAGAAACGC CGTTCAGAAA AAAGTCCAAC AAACTTTCAC CACCATCCCC GCCACTCTCC GCCTCTATTT CCACGACTGC TTCGTCAATG GGTGTGATGC ATCAGTGATG  ATAGCGTCAA CTGATAACAA TAAGGCGGAG AAAGATCACG AGGAAAATTT ATCGTTGGCC GGAGATGGAT TCGACACCGT CATTAAAGCT AAAGAAGCTA TTGATGCCGT CGCAAATTGT  CGTAACAAAG TTTCTTGCGC CGATATTATC ACGATGGCCA CTCGTGACGT CGTTAATCTT GCGGGTGGAC CAAAATACGA CGTGGAATTG GGAAGGCGAG ATGGACTGTC GTCAACGGCT 
GCTAGCGTCG GAGGGAAGTT GCCGCATCCG ACGGACGATG TCAACCAACT CACTTCACTT TTCGCCAAAA ATGGTCTTAG CCTTAACGAC ATGGTCGCTC TCTCCGGTAA GTGTTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTTTAAAACA TGGCTTTGGT GAATAATAAA ACGAATCTCT TGTTGCTTCT TCTCTCTCTT TTTCTAACAC TCAACCTCGG CTCCGCTCAA CTCCGTCGCG ATTTCTACGC CGGAAGTTGC  CCTAACGTCG AGAAAATCGT CAGAAACGCC GTTCAGAAAA AAGTCCAACA AACTTTCACC ACCATCCCCG CCACTCTCCG CCTCTATTTC CACGACTGCT TCGTCAATGG GTGTGATGCA  TCAGTGATGA TAGCGTCAAC TGATAACAAT AAGGCGGAGA AAGATCACGA GGAAAATTTA TCGTTGGCCG GAGATGGATT CGACACCGTC ATTAAAGCTA AAGAAGCTAT TGATGCCGTC  GCAAATTGTC GTAACAAAGT TTCTTGCGCC GATATTATCA CGATGGCCAC TCGTGACGTC GTTAATCTTG CGGGTGGACC AAAATACGAC GTGGAATTGG GAAGGCGAGA TGGACTGTCG  TCAACGGCTG CTAGCGTCGG AGGGAAGTTG CCGCATCCGA CGGACGATGT CAACCAACTC ACTTCACTTT TCGCCAAAAA TGGTCTTAGC CTTAACGACA TGGTCGCTCT CTCCGGTAAG 
TGTTGA 

Retrieve as FASTA