Sequence Properties
first value : protein second value (mature protein)
|
Length (aa): |
198 (172) |
PWM (Da): |
21264.87 (18381.2) |
|
PI (pH):
| 7.34 (6.25) |
Peptide Signal:
| cut: 27 range:27-198 |
|
Sequence 0
Send to BLAST
Send to Peroxiscan
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MALVNNKTNL LLLLLSLFLT LNLGSAQLRR DFYAGSCPNV EKIVRNAVQK KVQQTFTTIP ATLRLYFHDC FVNGCDASVM IASTDNNKAE KDHEENLSLA GDGFDTVIKA KEAIDAVANC
RNKVSCADII TMATRDVVNL AGGPKYDVEL GRRDGLSSTA ASVGGKLPHP TDDVNQLTSL FAKNGLSLND MVALSGKC*
|
Retrieve as FASTA
|
|
Remarks |
Partial sequence from genomic. 3'end is missing due to N in the sequence (scaffold border). |
DNA ►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
TTTTAAAACA TGGCTTTGGT GAATAATAAA ACGAATCTCT TGTTGCTTCT TCTCTCTCTT TTTCTAACAC TCAACCTCGG CTCCGCTCAA CTCCGTCGCG ATTTCTACGC CGGAAGTTGC
CCTAACGTCG AGAAAATCGT CAGAAACGCC GTTCAGAAAA AAGTCCAACA AACTTTCACC ACCATCCCCG CCACTCTCCG CCTCTATTTC CACGACTGCT TCGTCAATGT AAAACATATT
CTTTTCTTGA TAATTTTTTT GTTTCTTCTT GATCTTTAAC TTCTCTAGCG TAAATTTTAT TTTATTATTT TGTCTAATTT ATGGGTTGAC TGGTTAATAT GATAGGGGTG TGATGCATCA
GTGATGATAG CGTCAACTGA TAACAATAAG GCGGAGAAAG ATCACGAGGA AAATTTATCG TTGGCCGGAG ATGGATTCGA CACCGTCATT AAAGCTAAAG AAGCTATTGA TGCCGTCGCA
AATTGTCGTA ACAAAGTTTC TTGCGCCGAT ATTATCACGA TGGCCACTCG TGACGTCGTT AATCTTGTTA GTAACTCATT CTTAACTTAA TTTTATGTAA CAAGCGTGTT TTATTAAATT
AAAAACATTT TATTTTGTAA GTTAGTAAAT ATTAAATTCA ATATAGGCGG GTGGACCAAA ATACGACGTG GAATTGGGAA GGCGAGATGG ACTGTCGTCA ACGGCTGCTA GCGTCGGAGG
GAAGTTGCCG CATCCGACGG ACGATGTCAA CCAACTCACT TCACTTTTCG CCAAAAATGG TCTTAGCCTT AACGACATGG TCGCTCTCTC CGGTAAGTGT TGA
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTTTGG TGAATAATAA AACGAATCTC TTGTTGCTTC TTCTCTCTCT TTTTCTAACA CTCAACCTCG GCTCCGCTCA ACTCCGTCGC GATTTCTACG CCGGAAGTTG CCCTAACGTC
GAGAAAATCG TCAGAAACGC CGTTCAGAAA AAAGTCCAAC AAACTTTCAC CACCATCCCC GCCACTCTCC GCCTCTATTT CCACGACTGC TTCGTCAATG GGTGTGATGC ATCAGTGATG
ATAGCGTCAA CTGATAACAA TAAGGCGGAG AAAGATCACG AGGAAAATTT ATCGTTGGCC GGAGATGGAT TCGACACCGT CATTAAAGCT AAAGAAGCTA TTGATGCCGT CGCAAATTGT
CGTAACAAAG TTTCTTGCGC CGATATTATC ACGATGGCCA CTCGTGACGT CGTTAATCTT GCGGGTGGAC CAAAATACGA CGTGGAATTG GGAAGGCGAG ATGGACTGTC GTCAACGGCT
GCTAGCGTCG GAGGGAAGTT GCCGCATCCG ACGGACGATG TCAACCAACT CACTTCACTT TTCGCCAAAA ATGGTCTTAG CCTTAACGAC ATGGTCGCTC TCTCCGGTAA GTGTTGA
|
Retrieve as FASTA
|
|
cDNA►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
TTTTAAAACA TGGCTTTGGT GAATAATAAA ACGAATCTCT TGTTGCTTCT TCTCTCTCTT TTTCTAACAC TCAACCTCGG CTCCGCTCAA CTCCGTCGCG ATTTCTACGC CGGAAGTTGC
CCTAACGTCG AGAAAATCGT CAGAAACGCC GTTCAGAAAA AAGTCCAACA AACTTTCACC ACCATCCCCG CCACTCTCCG CCTCTATTTC CACGACTGCT TCGTCAATGG GTGTGATGCA
TCAGTGATGA TAGCGTCAAC TGATAACAAT AAGGCGGAGA AAGATCACGA GGAAAATTTA TCGTTGGCCG GAGATGGATT CGACACCGTC ATTAAAGCTA AAGAAGCTAT TGATGCCGTC
GCAAATTGTC GTAACAAAGT TTCTTGCGCC GATATTATCA CGATGGCCAC TCGTGACGTC GTTAATCTTG CGGGTGGACC AAAATACGAC GTGGAATTGG GAAGGCGAGA TGGACTGTCG
TCAACGGCTG CTAGCGTCGG AGGGAAGTTG CCGCATCCGA CGGACGATGT CAACCAACTC ACTTCACTTT TCGCCAAAAA TGGTCTTAGC CTTAACGACA TGGTCGCTCT CTCCGGTAAG
TGTTGA
|
Retrieve as FASTA
|
|