1. Browse the Database
  2. View Redoxidase
Entry information : LePrx79(Solyc05g050870.2.1)
Entry ID 15365
Creation 2018-07-25 (Christophe Dunand)
Last sequence changes 2018-07-25 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2019-05-07 (Bruno Savelli)
Peroxidase information: LePrx79(Solyc05g050870.2.1)
Name LePrx79(Solyc05g050870.2.1)
Class Class III peroxidase     [Orthogroup: Prx010]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LePrx79
start..stop		 S start..stop
LePrx78 364 2.8e-131 1..183 1..183
LePrx71 356 6.08e-126 1..183 135..317
NtPrx59-1B 329 2.51e-115 1..183 133..314
NtPrx59-1A 328 4.06e-115 1..183 133..314
Literature and cross-references LePrx79(Solyc05g050870.2.1)
Cluster/Prediction ref. Phytozome Gene 12:   36145954 [3' end]
Protein sequence: LePrx79(Solyc05g050870.2.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   183 (302)
PWM (Da):   %s   19596.57 (32257.9)  
PI (pH):   %s   8.85 (4.57) Peptide Signal:   %s   cut: 28 range:28-329
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
LGGPSWTVLL GRRDSTTASL SNANSDIPAP TLNLSSLISS FSNKGFSSRE MVALSGSHTI GQARCTTFRD RLYNETDINA SFATSVKSNC PQSGSDNDIS PLDATSPTTF DNIYYKNLRI 
QKGLLHSDQQ LSSGGSTDSI VNTYSSNSAT FFTDFANAMV KMGNLSPLTG TNGQIRKNCR KTN* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Exon 1 and 2 are missing due to "n" in the sequence. No EST. ch05:61080020..61081466.
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTTGGTGGAC CTAGTTGGAC TGTATTACTA GGAAGAAGAG ACTCAACCAC TGCAAGTTTG AGTAACGCAA ATAGTGACAT ACCTGCACCA ACTTTGAATC TTAGCAGTCT TATTTCTTCC  TTTTCTAATA AAGGTTTCAG TTCCAGAGAA ATGGTCGCTC TCTCAGGTTT TTTTTTTACA TTAAATATTT TTTTTAAATC AAGTCACGAG ATTTGCGTAC GCTAAATTGA TTTTTTTTTG  GGATTGTACA GGTTCTCACA CGATAGGACA AGCAAGATGC ACTACTTTTC GCGATCGTCT CTATAACGAA ACTGATATAA ATGCTTCATT CGCTACATCG GTTAAATCGA ACTGTCCACA  AAGTGGAAGT GACAATGACA TCTCTCCATT AGACGCCACA AGCCCAACCA CATTTGATAA TATTTACTAT AAGAATCTGC GAATTCAAAA GGGTCTTCTT CATTCTGACC AACAACTCTC  TAGTGGAGGC TCAACAGACT CTATCGTTAA CACTTATAGT TCCAATTCAG CCACTTTCTT CACTGATTTT GCAAATGCCA TGGTGAAAAT GGGTAATCTT AGCCCACTTA CTGGCACCAA 
TGGTCAAATC CGCAAAAATT GTAGGAAGAC CAATTAA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTTGGTGGAC CTAGTTGGAC TGTATTACTA GGAAGAAGAG ACTCAACCAC TGCAAGTTTG AGTAACGCAA ATAGTGACAT ACCTGCACCA ACTTTGAATC TTAGCAGTCT TATTTCTTCC  TTTTCTAATA AAGGTTTCAG TTCCAGAGAA ATGGTCGCTC TCTCAGGTTC TCACACGATA GGACAAGCAA GATGCACTAC TTTTCGCGAT CGTCTCTATA ACGAAACTGA TATAAATGCT  TCATTCGCTA CATCGGTTAA ATCGAACTGT CCACAAAGTG GAAGTGACAA TGACATCTCT CCATTAGACG CCACAAGCCC AACCACATTT GATAATATTT ACTATAAGAA TCTGCGAATT  CAAAAGGGTC TTCTTCATTC TGACCAACAA CTCTCTAGTG GAGGCTCAAC AGACTCTATC GTTAACACTT ATAGTTCCAA TTCAGCCACT TTCTTCACTG ATTTTGCAAA TGCCATGGTG 
AAAATGGGTA ATCTTAGCCC ACTTACTGGC ACCAATGGTC AAATCCGCAA AAATTGTAGG AAGACCAATT AA 

Retrieve as FASTA