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Entry information : PviPrx09(Pavir.2NG638900 / PvPrx9)
Entry ID 15882
Creation 2019-10-09 (Christophe Dunand)
Last sequence changes 2019-10-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-10-09 (Christophe Dunand)
Peroxidase information: PviPrx09(Pavir.2NG638900 / PvPrx9)
Name PviPrx09(Pavir.2NG638900 / PvPrx9)
Class Class III peroxidase    [Orthogroup: Prx057]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Panicum
Organism Panicum virgatum    [TaxId: 38727 ]
Cellular localisation N/D
Tissue types Etiolated seedlings
Roots
Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PviPrx09
start..stop		 S start..stop
SiPrx131 490 2.12e-176 40..336 17..312
SiPrx129 476 9.9e-171 40..336 17..312
SiPrx120 456 2.91e-162 17..335 41..351
TaPrx26-1A 451 4.25e-161 17..336 1..313
Literature and cross-references PviPrx09(Pavir.2NG638900 / PvPrx9)
Literature Moural,T.W., Lewis,K.M., Barnaba,C., Zhu,F., Palmer,N.A., Sarath,G., Scully,E.D., Jones,J.P., Sattler,S.E. and Kang,C. Characterization of Class III Peroxidases from Switchgrass. Plant Physiol. 173 (1), 417-433 (2017)
EST ref. GenBank:   FL887750.1 [5' end]
Protein sequence: PviPrx09(Pavir.2NG638900 / PvPrx9)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   337 (293)
PWM (Da):   %s   35459.58 (30896.2) Transmb domain:   %s   i21-43o
PI (pH):   %s   6.75 (5.99) Peptide Signal:   %s   cut: 45 range:45-337
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MHGGPFNLQT CTRAIAMAAS ASFLIIRCFC LVLVVALLAS GASAQLSSTF YDTSCPNALS TIRSAVNAAV AQENRMGASL LRLHFHDCFV QGCDASVLLN DTNGGEQNAL PNAGSLRGFG  VIDNIKAQVE ALCPQTVSCA DILAVAARDS VVALGGPSWT VPLGRRDSTN SSAALANSDL PPPQFNLSQL ITAFGNKNLD PTDLVALSGA HTIGQAQCLN FRAHITEPNI NPTFAASLRA 
NCPATGGDTN LAPLDVTTPN TFDNAYYTNL LNQRGLLHSD QELFNNASTD STVRNFASNA AAFTTAFTTA MIKMGNLQPL TGTQGQIRRN CWRVNSS* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). Peptide sequence (before QL) is different between genomic DNA from Phytozome and and published data. Several ESTs confirmed Genomic DNA.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCATGGAG GGCCCTTTAA TTTGCAGACC TGCACACGAG CAATAGCCAT GGCGGCCTCT GCTTCTTTCC TTATTATTAG GTGCTTCTGC TTGGTGTTGG TGGTGGCGCT GCTGGCCTCC  GGGGCGTCGG CGCAGCTGTC GTCGACCTTC TACGACACGT CGTGCCCCAA CGCGCTGTCC ACCATCAGGA GCGCGGTGAA CGCGGCGGTG GCGCAGGAGA ACCGCATGGG AGCCTCCTTG  CTCAGGCTGC ACTTCCACGA CTGCTTTGTC CAGGCAAGTC CATCGATCCA TGTTATTTTC TTTCCGTCAC AAATTAATGC ATCAATAATT ATATTAATTA TCATATTCTG CAGGGCTGCG  ACGCGTCCGT TCTGCTGAAT GACACCAACG GCGGGGAGCA GAACGCGCTT CCGAACGCTG GATCGCTGAG GGGCTTCGGC GTCATCGACA ACATCAAGGC GCAGGTGGAG GCTTTGTGCC  CGCAGACCGT CTCCTGCGCC GACATCCTCG CCGTCGCCGC CCGTGACTCC GTCGTCGCGG TGAGATCGAT TGCCTGCCTC ATCGATGTTG CTAGCTAGCT GTTGCATGCG TTGGTTTAAT  TTAAAACAAG CGGCCATGCA TGCATGCAGC TCGGCGGGCC TTCATGGACC GTTCCACTGG GAAGAAGGGA CTCTACCAAT TCAAGCGCGG CCCTGGCAAA TAGCGACCTC CCACCTCCTC  AGTTTAACCT CTCGCAGCTT ATCACTGCGT TTGGGAACAA GAACCTCGAC CCAACAGACC TGGTTGCCCT CTCTGGTAAT TCTCCTGGCT AGCCTGGCTT TGATCGAAAC TAATAACATT  TTTAATCGAT CTTTGATGCA TGCATGCAGG TGCTCACACA ATCGGACAAG CGCAGTGCCT CAACTTCCGG GCCCACATCA CCGAGCCCAA CATCAACCCC ACCTTCGCCG CGTCGCTCAG  GGCCAACTGC CCCGCCACAG GCGGCGACAC CAACCTGGCG CCGCTGGACG TCACCACGCC CAACACCTTC GACAACGCCT ACTACACCAA CCTGCTCAAC CAGAGGGGGC TCCTGCACTC  CGACCAGGAG CTCTTCAACA ACGCCAGCAC CGACAGCACT GTCCGCAACT TCGCGTCCAA CGCAGCCGCC TTCACCACCG CCTTCACCAC GGCCATGATC AAGATGGGCA ACCTCCAGCC 
GCTCACCGGG ACCCAGGGCC AGATCAGGCG CAACTGCTGG AGGGTCAACT CGTCGTAA 

Retrieve as FASTA  
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCATGGAG GGCCCTTTAA TTTGCAGACC TGCACACGAG CAATAGCCAT GGCGGCCTCT GCTTCTTTCC TTATTATTAG GTGCTTCTGC TTGGTGTTGG TGGTGGCGCT GCTGGCCTCC  GGGGCGTCGG CGCAGCTGTC GTCGACCTTC TACGACACGT CGTGCCCCAA CGCGCTGTCC ACCATCAGGA GCGCGGTGAA CGCGGCGGTG GCGCAGGAGA ACCGCATGGG AGCCTCCTTG  CTCAGGCTGC ACTTCCACGA CTGCTTTGTC CAGGGCTGCG ACGCGTCCGT TCTGCTGAAT GACACCAACG GCGGGGAGCA GAACGCGCTT CCGAACGCTG GATCGCTGAG GGGCTTCGGC  GTCATCGACA ACATCAAGGC GCAGGTGGAG GCTTTGTGCC CGCAGACCGT CTCCTGCGCC GACATCCTCG CCGTCGCCGC CCGTGACTCC GTCGTCGCGC TCGGCGGGCC TTCATGGACC  GTTCCACTGG GAAGAAGGGA CTCTACCAAT TCAAGCGCGG CCCTGGCAAA TAGCGACCTC CCACCTCCTC AGTTTAACCT CTCGCAGCTT ATCACTGCGT TTGGGAACAA GAACCTCGAC  CCAACAGACC TGGTTGCCCT CTCTGGTGCT CACACAATCG GACAAGCGCA GTGCCTCAAC TTCCGGGCCC ACATCACCGA GCCCAACATC AACCCCACCT TCGCCGCGTC GCTCAGGGCC  AACTGCCCCG CCACAGGCGG CGACACCAAC CTGGCGCCGC TGGACGTCAC CACGCCCAAC ACCTTCGACA ACGCCTACTA CACCAACCTG CTCAACCAGA GGGGGCTCCT GCACTCCGAC  CAGGAGCTCT TCAACAACGC CAGCACCGAC AGCACTGTCC GCAACTTCGC GTCCAACGCA GCCGCCTTCA CCACCGCCTT CACCACGGCC ATGATCAAGA TGGGCAACCT CCAGCCGCTC 
ACCGGGACCC AGGGCCAGAT CAGGCGCAAC TGCTGGAGGG TCAACTCGTC GTAA 

Retrieve as FASTA