Entry information : SaPrx20
Entry ID 15989
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-01 (Christophe Dunand)
Peroxidase information: SaPrx20
Name SaPrx20
Class Class III peroxidase    [Orthogroup: Prx030]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx20
start..stop
S start..stop
OcPrx03 522 0 1..338 1..347
MguPrx10 489 9.89e-176 21..338 4..329
IaquPrx04 444 5.53e-158 1..338 1..332
InPrx02 436 1.42e-154 1..338 1..331
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '15989' 'complement(join(234167..234570,234601..234766,235007..235198,235301..235552))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 235301..235552 250 N° 2 235007..235198 190 N° 3 234601..234766 164 N° 4 234167..234570 402
complement(join(234167..234570,234601..234766,235007..235198,235301..235552))


exon

Literature and cross-references SaPrx20
Protein ref. GenBank:   GER43981.1
Protein sequence: SaPrx20
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338 (318)
PWM (Da):   %s   36063.72 (33861.5)  
PI (pH):   %s   4.16 (4.16) Peptide Signal:   %s   cut: 21 range:21-338
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGIYLATIYL ILLNFSASFA NITNTTVSNE AEACVDANIV LSFNFYINSC PEAEPIVFSW VEKALSDDPR MAASLLRLHF HDCFGCDASV LLDDTLGFVG EKTAAPNANS LRGFEVIDAI  KADLEYVCPQ TVSCADILAI AARDSVVLSG GPGWEVEMGR KDSVGANKAA ANSNIPAPNS DLSTLLSKFQ NLGLSLQDMV ALSGAHTMGK ARCSTFAARL NNNNNTNDII SDNAPNVNLE 
FLQSLEQLCS QPSAGSTLAD LDHSTPTTFD NQYYLNLLSG EGLLGSDQEL LKEGPRGIIE LYADDVDVFF EDFKKAMLKM GSLLGSGGAP GEIRRNCR 

Retrieve as FASTA  
Remarks complete sequence from genomic
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATAT ACTTAGCCAC TATCTACTTG ATCTTGCTCA ACTTTTCAGC TTCGTTTGCC AACATCACAA ACACGACTGT ATCCAACGAG GCAGAAGCAT GTGTCGATGC TAACATCGTT  TTAAGCTTTA ATTTCTACAT TAACAGTTGC CCTGAAGCCG AACCAATCGT TTTCTCTTGG GTTGAAAAAG CGCTTTCCGA TGACCCGAGA ATGGCTGCCT CTTTGCTTCG TCTCCATTTT  CACGATTGCT TTGGATGTGA TGCGTCGGTG TTACTCGACG ACACGTTGGG TTTCGTTGGG GAGAAAACCG CGGCTCCAAA CGCGAACTCC TTAAGGGGAT TTGAAGTAAT AGATGCCATA  AAAGCTGATC TTGAATATGT CTGCCCTCAG ACAGTGTCTT GTGCTGATAT TCTTGCTATT GCAGCTAGAG ATTCTGTTGT GCTGTCAGGT GGGCCTGGAT GGGAAGTGGA AATGGGCAGG  AAAGATAGTG TGGGGGCCAA CAAAGCCGCA GCCAACAGCA ATATACCTGC TCCTAATTCT GATTTATCAA CATTGTTGTC AAAATTCCAG AATCTTGGCC TGTCACTCCA AGACATGGTT  GCACTTTCTG GCGCGCACAC CATGGGAAAA GCCCGATGCT CGACATTTGC CGCTCGTCTA AACAACAACA ACAACACGAA CGACATTATT TCCGATAATG CCCCTAACGT CAACCTCGAA  TTCCTACAGT CACTCGAGCA GCTATGCTCG CAACCCAGTG CTGGCTCGAC CCTTGCCGAC CTCGACCACA GCACGCCCAC GACTTTCGAC AATCAATATT ACCTCAATCT TCTCTCAGGC  GAAGGCCTTC TTGGGTCCGA CCAGGAGTTG CTGAAGGAGG GCCCGCGTGG CATAATCGAG CTCTACGCGG ATGATGTGGA CGTGTTTTTC GAGGATTTTA AGAAGGCTAT GCTGAAAATG 
GGGAGCCTGC TGGGGAGTGG AGGGGCGCCG GGAGAAATTC GTAGAAATTG TCGG 

Retrieve as FASTA