Entry information : SaPrx[P]23
Entry ID 15990
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2019-12-03 (Christophe Dunand)
Peroxidase information: SaPrx[P]23
Name SaPrx[P]23
Class Class III peroxidase     [Orthogroup: Prx018]*
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx[P]23
start..stop
S start..stop
SaPrx19 261 7e-87 1..154 1..157
SaPrx19 50 0.0000003 152..185 299..340
MguPrx25 213 2e-68 24..152 15..143
EcaPrx03 200 2e-65 32..152 29..149
NtPrx08-1B 205 3e-65 16..152 6..144
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 911440..911670 231 N° 2 911786..911977 192 N° 3 912210..912578 369  
join(911440..911670,911786..911977,912210..912578)


exon

Literature and cross-references SaPrx[P]23
Protein ref. GenBank:   GER47048.1
Protein sequence: SaPrx[P]23
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   263
PWM (Da):   %s   28616.37  
PI (pH):   %s   4.7
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MTHIQITLLE KSMAPLFPFL LSAVSASPPP ALRTAFYSET CPQAEAIARG VLRQAMAREI RIAASVMRLQ FHDCLVNDCD GSLLLDDTPN MVGEKLALSN IDSLRSYEVI DEIKEALERT  CPGIVSCADI IIMAARDAVL LSEGPHWEVK LGEFFGAFVE GMIKLGIFAV RDCRVVNDGP LLLTQAQRQG SVCFPTDVNC VNCYCTCQDS SRGLSLKCDN NFSAISCLFA CWDDGLVIQA 
KSVILLNGSV LCLEPSKVFK LYG 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Exon 3 and part of exon 4 are missing.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACGCATA TCCAGATTAC ACTACTCGAG AAAAGTATGG CCCCCTTGTT TCCCTTCCTC CTCTCCGCCG TCTCCGCCTC GCCGCCGCCG GCCCTCCGCA CTGCTTTCTA CTCGGAGACC  TGCCCGCAGG CGGAGGCCAT CGCACGGGGC GTCCTCAGGC AGGCCATGGC CAGAGAAATT AGAATCGCTG CCTCTGTTAT GCGCCTACAG TTCCATGATT GTCTAGTTAA TGATTGTGAT  GGGTCATTGT TGCTGGATGA CACGCCGAAC ATGGTTGGAG AGAAATTGGC TTTGTCGAAC ATAGATTCGC TGAGATCGTA CGAAGTGATC GATGAGATTA AGGAAGCATT GGAGAGGACG  TGTCCTGGAA TTGTCTCTTG TGCCGATATC ATCATCATGG CTGCTAGAGA TGCTGTTCTT CTGAGTGAGG GCCCACACTG GGAAGTGAAA TTGGGCGAGT TTTTCGGGGC ATTTGTAGAG  GGGATGATTA AGCTAGGGAT ATTTGCAGTC CGGGATTGCA GGGTGGTTAA TGATGGGCCG TTGTTGCTGA CCCAAGCCCA ACGTCAGGGT TCGGTTTGTT TTCCAACAGA TGTTAATTGT  GTTAATTGTT ATTGTACATG TCAAGACTCA AGCAGAGGTT TAAGCCTAAA ATGCGATAAT AATTTTTCTG CAATATCATG TTTGTTTGCA TGTTGGGATG ATGGCTTGGT TATACAAGCA 
AAAAGTGTAA TATTATTAAA TGGCTCTGTG CTGTGTTTGG AACCGAGCAA GGTGTTCAAA TTGTATGGAT AA 

Retrieve as FASTA