Entry information : SaAPx02
Entry ID 16011
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-10 (Christophe Dunand)
Peroxidase information: SaAPx02
Name SaAPx02
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaAPx02
start..stop
S start..stop
MguAPx02 454 1e-164 1..246 1..246
NtAPx03-1B 449 6e-163 1..246 1..246
NtAPx03-1A 446 8e-162 1..246 1..246
NtAPx03-1A_unknown 445 3e-161 1..246 1..246
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1247144..1247262 119 N° 2 1248031..1248205 175 N° 3 1248302..1248367 66 N° 4 1248843..1248891 49
N° 5 1249057..1249142 86 N° 6 1249236..1249315 80 N° 7 1249438..1249540 103 N° 8 1249616..1249681 66
join(1247144..1247262,1248031..1248205,1248302..1248367,1248843..1248891,1249057 ..1249142,1249236..1249315,1249438..1249540,1249616..1249681)


exon

Literature and cross-references SaAPx02
Literature Liang,L. and Lynn,D.G. Cloning of genes for Striga asiatica haustorium formation by suppressive subtractive hybridization (SSH).Unpublished (03-APR-2006)
Protein ref. GenBank:   GER34836.1 UniProtKB:   Q1W397 [Incorrect prediction]
Protein sequence: SaAPx02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   247
PWM (Da):   %s   27138.91  
PI (pH):   %s   5.2
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVKNYPTVSE EYLKAVEKAR QKLRGLIAEK NCAPLMLRLA WHSAGTYDKL SKTGGPFGTM RLEAELAHGA NNGLDIAVRL LQPIKDQFPI LSYADFYQLA GVVAVEVTGG PEIPFHPGRK  DELEAPVEGR LPDATQGSDH LRDVFIKQMG LTDKDIVALS GGHTLGRAHK ERSGFEGPWT ENPLIFDNSY FKELLEGDKD GLLKLPSDKA LLSDPCFRPL VEKYAADEDA FFADYAESHL 
KLSELGA 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTGAAGA ACTACCCGAC TGTGAGTGAG GAGTACCTCA AGGCTGTTGA GAAGGCCAGG CAGAAGCTCA GAGGTCTCAT CGCTGAGAAG AACTGTGCTC CTCTTATGCT CCGTCTTGCA  TGGCACTCAG CTGGTACCTA TGACAAGCTT AGCAAGACTG GAGGCCCTTT CGGCACCATG AGGCTTGAGG CTGAGCTAGC ACATGGTGCC AACAACGGTC TTGACATTGC TGTGAGGCTC  CTGCAGCCAA TCAAGGATCA ATTCCCCATC CTTTCTTATG CTGACTTCTA TCAGTTGGCT GGAGTTGTAG CAGTTGAAGT GACTGGAGGA CCTGAAATTC CATTCCACCC AGGCAGGAAG  GATGAGCTGG AGGCACCAGT TGAAGGCCGC CTGCCAGATG CTACTCAGGG ATCTGACCAC CTCAGGGATG TTTTCATCAA ACAAATGGGT CTAACCGACA AGGACATTGT TGCATTGTCT  GGTGGCCACA CTCTGGGAAG GGCCCATAAG GAACGGTCTG GATTTGAGGG ACCCTGGACT GAAAACCCTC TCATCTTTGA CAACTCGTAC TTCAAGGAGC TTCTGGAAGG AGACAAAGAT  GGACTCTTGA AGTTGCCGTC TGATAAGGCT CTTCTTTCTG ACCCTTGCTT CCGCCCACTC GTTGAGAAAT ATGCTGCGGA TGAGGATGCT TTCTTTGCTG ATTATGCCGA GTCTCACCTG 
AAGCTCTCTG AGTTGGGnGC ATAA 

Retrieve as FASTA