Entry information : SaPrx54
Entry ID 16021
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-05 (Christophe Dunand)
Peroxidase information: SaPrx54
Name SaPrx54
Class Class III peroxidase    [Orthogroup: Prx006]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx54
start..stop
S start..stop
SaPrx53 634 0 1..324 1..324
SaPrx60 551 0 1..324 1..323
MguPrx40 507 0 18..324 18..324
MguPrx102 457 2e-163 3..324 4..324
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 262916..263125 210 N° 2 262627..262815 189 N° 3 262290..262455 166 N° 4 261755..262164 410
complement(join(261755..262164,262290..262455,262627..262815,262916..263125))


exon

Literature and cross-references SaPrx54
Protein ref. GenBank:   GER53240.1
Protein sequence: SaPrx54
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324
PWM (Da):   %s   34996.65  
PI (pH):   %s   8.64
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MATQKLFALC LFALVFVHRA RAQGLSTNFY DSTCPNVGAI VKQTTARFIS RAPSLAPALL RMHFHDCFVS GCDGSVLLNS TANNTAERDS FPNLSLRGFQ VVDAAKAALE KYCPGKVSCA  DILALVARDA VSQIKGPFWE VPLGRRDGSV SIANEVLANL PPPFFNISQL ISNFAGKGLS VKDLAVLSGG HTIGVSHCSS FTNRLYNFTG RNDADPSMDP NYVAALKRRC SPTDTTTIVQ 
MDPGSFINFD TDYFSIVKKR RGLFTTDAEL LKNDETRAYV QQHMTSSGDP SFFADFAESM VKMGKIGVLT GTTGQIRRVC SVAN 

Retrieve as FASTA  
Remarks Complete sequence from genomic.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCAACTC AGAAGCTATT TGCTCTTTGC TTATTCGCGC TCGTTTTCGT TCATCGGGCC AGAGCCCAAG GCCTGTCGAC CAATTTCTAT GACTCAACGT GTCCGAATGT TGGTGCTATC  GTGAAACAAA CAACCGCAAG ATTCATTTCC CGAGCGCCAT CACTTGCACC GGCTTTACTT AGGATGCATT TCCATGATTG TTTTGTTAGT GGTTGTGATG GATCCGTACT TCTAAACTCA  ACAGCCAATA ACACGGCCGA GAGGGACTCA TTTCCGAACC TTAGCCTTAG AGGGTTTCAA GTCGTTGATG CTGCAAAAGC TGCATTGGAG AAGTATTGTC CCGGAAAAGT TTCTTGTGCC  GATATCCTGG CATTAGTTGC TCGTGATGCA GTTTCACAGA TAAAGGGACC ATTTTGGGAA GTTCCTTTGG GCAGACGAGA TGGAAGTGTA TCGATTGCGA ATGAGGTGCT AGCGAATCTT  CCGCCTCCAT TCTTCAATAT TAGCCAACTC ATTTCCAATT TCGCGGGCAA GGGTTTAAGC GTCAAGGACC TCGCTGTCCT CTCAGGTGGA CACACGATCG GGGTTTCGCA CTGCTCGAGT  TTCACGAACC GACTGTACAA CTTCACGGGA AGGAACGACG CGGACCCAAG CATGGACCCG AACTACGTGG CGGCACTCAA GAGGCGGTGC TCCCCTACGG ACACGACCAC CATAGTGCAG  ATGGACCCCG GCAGCTTCAT CAATTTCGAC ACGGACTATT TCTCGATAGT GAAGAAGAGA CGGGGGCTTT TCACCACCGA TGCTGAGCTT CTGAAGAACG ACGAGACGAG AGCGTACGTG  CAGCAGCACA TGACGTCATC TGGTGACCCG AGTTTCTTCG CGGATTTTGC CGAGTCAATG GTGAAGATGG GCAAAATTGG GGTCCTCACG GGGACTACTG GCCAAATCAG AAGGGTTTGT 
TCTGTTGCTA ACTAA 

Retrieve as FASTA