View Redoxidase 16028

Entry information : SaAPx-R01

Entry ID	16028
Creation	2019-11-27 (Christophe Dunand)
Last sequence changes	2019-11-27 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2019-12-10 (Christophe Dunand)

Peroxidase information: SaAPx-R01

Name

SaAPx-R01

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga

Organism

Striga asiatica (witchweed) [TaxId: 4170 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SaAPx-R01 start..stop	S start..stop
MguAPx-R	491	2.47e-177	1..315	1..310
IaquAPx-R01	419	2.25e-148	58..316	76..338
InAPx-R01	414	4.12e-146	58..316	78..340
VvAPx-R	410	9.93e-145	9..315	7..329

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '16028' 'complement(join(583493..583595,583853..583919,584085..584206,584714..584797,584879..584975,585071..585113,585194..585264,585428..585543,585968..586215))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	585968..586215	246	N° 2	585428..585543	114	N° 3	585194..585264	69	N° 4	585071..585113	41
N° 5	584879..584975	95	N° 6	584714..584797	82	N° 7	584085..584206	120	N° 8	583853..583919	65
N° 9	583493..583595	101
complement(join(583493..583595,583853..583919,584085..584206,584714..584797,5848 79..584975,585071..585113,585194..585264,585428..585543,585968..586215))

Literature and cross-references SaAPx-R01

Protein ref.	GenBank: GER51685.1

Protein sequence: SaAPx-R01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	316
PWM (Da):	33597.38
PI (pH):	7.94

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MRSTVAAVDP SLLVPATSFT AGIALIVPAR TLPPVKSVRK RLSVACAAAS PSHSASTFGR RGLLYMATAS FLMTSPSLSS PIDETILLQD EIGKVLSKGK AAGLLRLVFH DAGTFDEGDK TGGMNGSIVY ELDRPENMGL EKSLKVLAKA KAQVEAVRPV SWADLIAVGG AEAVSVCGGP KISVQLGRID ATVPDPDGKL PEESLNAAAM KQCFLKKGFS TQELVALSGA HTLGSKGFGN
PVVFDNSYYK ILLEKPWSSS DGMSSMIGLP SDRALVEDEE CIRWISKYAN DQDLFFEDFK NVYTKLVNTG AKWRTT

Retrieve as FASTA

Remarks

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGAGGAGCA CTGTAGCCGC CGTCGATCCG TCGCTACTCG TCCCTGCCAC CTCCTTCACC GCCGGTATCG CGCTCATTGT TCCGGCCAGA ACCTTACCTC CCGTCAAATC CGTCCGGAAA AGGCTCTCCG TAGCCTGTGC GGCTGCTTCT CCTTCGCATT CTGCGTCTAC ATTCGGAAGG CGAGGGCTGC TGTATATGGC GACGGCGTCG TTTCTCATGA CTTCCCCCAG CTTGTCCTCG CCTATTGATG AGACGATTCT GTTACAAGAT GAGATTGGGA AAGTTTTGTC CAAAGGCAAG GCTGCCGGTT TACTTCGTCT AGTATTTCAT GACGCCGGAA CTTTTGATGA GGGTGATAAA ACAGGTGGTA TGAATGGTTC GATAGTTTAT GAGCTTGACA GACCCGAAAA TATGGGTCTC GAGAAGTCAC TGAAGGTACT TGCTAAAGCG AAAGCTCAAG TGGAAGCAGT ACGACCAGTA TCCTGGGCGG ATTTGATAGC TGTGGGTGGG GCCGAGGCTG TCTCTGTGTG TGGAGGTCCG AAGATCTCTG TTCAACTGGG AAGAATTGAT GCAACGGTGC CTGATCCTGA TGGGAAGCTT CCAGAAGAAT CACTAAATGC GGCTGCCATG AAGCAATGCT TTCTAAAGAA AGGCTTCTCA ACCCAGGAAC TTGTTGCTTT ATCTGGAGCT CATACTCTTG GAAGCAAAGG TTTTGGAAAC CCAGTTGTCT TCGACAATTC TTACTATAAG ATTCTTCTAG AGAAGCCATG GTCTTCTTCA GATGGGATGT CTAGTATGAT TGGCCTTCCT TCCGACCGTG CACTAGTTGA GGATGAAGAA
TGCATCAGGT GGATCTCAAA ATATGCTAAT GATCAGGATC TTTTCTTCGA AGATTTTAAG AATGTGTATA CTAAACTCGT GAACACTGGT GCAAAGTGGA GAACTACGTG A

Retrieve as FASTA