Entry information : SaAPx-R01
Entry ID 16028
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-10 (Christophe Dunand)
Peroxidase information: SaAPx-R01
Name SaAPx-R01
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaAPx-R01
start..stop
S start..stop
MguAPx-R 491 2e-177 1..315 1..310
VvAPx-R 410 9e-145 9..315 7..329
LeAPx-R 387 4e-136 3..314 2..323
GhAPx-R 385 1e-134 60..315 67..333
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 585968..586215 248 N° 2 585428..585543 116 N° 3 585194..585264 71 N° 4 585071..585113 43
N° 5 584879..584975 97 N° 6 584714..584797 84 N° 7 584085..584206 122 N° 8 583853..583919 67
N° 9 583493..583595 103  
complement(join(583493..583595,583853..583919,584085..584206,584714..584797,5848 79..584975,585071..585113,585194..585264,585428..585543,585968..586215))


exon

Literature and cross-references SaAPx-R01
Protein ref. GenBank:   GER51685.1
Protein sequence: SaAPx-R01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316
PWM (Da):   %s   33597.38  
PI (pH):   %s   7.94
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRSTVAAVDP SLLVPATSFT AGIALIVPAR TLPPVKSVRK RLSVACAAAS PSHSASTFGR RGLLYMATAS FLMTSPSLSS PIDETILLQD EIGKVLSKGK AAGLLRLVFH DAGTFDEGDK  TGGMNGSIVY ELDRPENMGL EKSLKVLAKA KAQVEAVRPV SWADLIAVGG AEAVSVCGGP KISVQLGRID ATVPDPDGKL PEESLNAAAM KQCFLKKGFS TQELVALSGA HTLGSKGFGN 
PVVFDNSYYK ILLEKPWSSS DGMSSMIGLP SDRALVEDEE CIRWISKYAN DQDLFFEDFK NVYTKLVNTG AKWRTT 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGAGCA CTGTAGCCGC CGTCGATCCG TCGCTACTCG TCCCTGCCAC CTCCTTCACC GCCGGTATCG CGCTCATTGT TCCGGCCAGA ACCTTACCTC CCGTCAAATC CGTCCGGAAA  AGGCTCTCCG TAGCCTGTGC GGCTGCTTCT CCTTCGCATT CTGCGTCTAC ATTCGGAAGG CGAGGGCTGC TGTATATGGC GACGGCGTCG TTTCTCATGA CTTCCCCCAG CTTGTCCTCG  CCTATTGATG AGACGATTCT GTTACAAGAT GAGATTGGGA AAGTTTTGTC CAAAGGCAAG GCTGCCGGTT TACTTCGTCT AGTATTTCAT GACGCCGGAA CTTTTGATGA GGGTGATAAA  ACAGGTGGTA TGAATGGTTC GATAGTTTAT GAGCTTGACA GACCCGAAAA TATGGGTCTC GAGAAGTCAC TGAAGGTACT TGCTAAAGCG AAAGCTCAAG TGGAAGCAGT ACGACCAGTA  TCCTGGGCGG ATTTGATAGC TGTGGGTGGG GCCGAGGCTG TCTCTGTGTG TGGAGGTCCG AAGATCTCTG TTCAACTGGG AAGAATTGAT GCAACGGTGC CTGATCCTGA TGGGAAGCTT  CCAGAAGAAT CACTAAATGC GGCTGCCATG AAGCAATGCT TTCTAAAGAA AGGCTTCTCA ACCCAGGAAC TTGTTGCTTT ATCTGGAGCT CATACTCTTG GAAGCAAAGG TTTTGGAAAC  CCAGTTGTCT TCGACAATTC TTACTATAAG ATTCTTCTAG AGAAGCCATG GTCTTCTTCA GATGGGATGT CTAGTATGAT TGGCCTTCCT TCCGACCGTG CACTAGTTGA GGATGAAGAA 
TGCATCAGGT GGATCTCAAA ATATGCTAAT GATCAGGATC TTTTCTTCGA AGATTTTAAG AATGTGTATA CTAAACTCGT GAACACTGGT GCAAAGTGGA GAACTACGTG A 

Retrieve as FASTA