Entry information : AtrPrx54(AmTr_v1.0_scaffold00083.28)
Entry ID 16640
Creation 2020-11-09 (Christophe Dunand)
Last sequence changes 2020-11-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-12 (Christophe Dunand)
Peroxidase information: AtrPrx54(AmTr_v1.0_scaffold00083.28)
Name AtrPrx54(AmTr_v1.0_scaffold00083.28)
Class Class III peroxidase     [Orthogroup: Prx036]*
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx54
start..stop
S start..stop
MguPrx15 430 3e-152 49..339 41..335
EferPrx128 426 9e-151 49..339 38..333
EferPrx49 426 1e-150 16..339 18..332
AcoPrx01 426 6e-149 46..339 158..455
Literature and cross-references AtrPrx54(AmTr_v1.0_scaffold00083.28)
Protein sequence: AtrPrx54(AmTr_v1.0_scaffold00083.28)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344
PWM (Da):   %s   37568.4  
PI (pH):   %s   4.62
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDGFKASLCL LMVSLSFSLS LAFFPDYYYW GDGDGSRSNV NYSYNYHGLS PYFYDYTCPQ ANEVVIRVLE NAFAQDPRLP ASLLRLHFHD CFVQGCDGSL LLDNSESVAS EKKSGPNLNS  VRGFEVVDLV KAELEAVCPG VVSCADLLAL AARASSVLSG GPSWEVAVGR RDSRTASLSL SDANVPAPNS TFQTLLQQFS KQGLDEVDLV ALSGSHTLGM ARCVTFRQRL YNQNGNGQPD 
ASLEGDFYNR LTSCCPSSGG DNNLSPLDMV SPTKFDNYYY KLLLWGKSLL NSDMVLVTEV GGKTLVQSYA ENEDLFFDQF AKVKMGNLNP LLGSQGEVRT RLAN* 

Retrieve as FASTA  
Remarks Incorrect prediction from Phytozome (end of last exon was missing due to frame shift)
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATGGAT TTAAAGCTTC ACTGTGTCTT CTCATGGTTT CTCTCTCCTT CTCCCTCTCT CTAGCTTTTT TTCCCGACTA TTATTATTGG GGCGATGGGG ATGGTAGCCG ATCCAATGTG  AATTATAGTT ACAATTACCA TGGACTGAGT CCTTATTTCT ACGACTATAC ATGCCCTCAA GCAAATGAGG TTGTGATTAG AGTGTTGGAG AACGCCTTTG CCCAGGATCC AAGGCTTCCT  GCTTCATTGC TTAGGCTTCA CTTTCATGAT TGCTTTGTGC AGGGTTGTGA TGGTTCGCTT CTGTTAGACA ACAGCGAATC GGTGGCGAGC GAGAAGAAGT CGGGCCCAAA TCTTAATTCA  GTGAGAGGTT TTGAAGTGGT TGATTTGGTA AAGGCTGAAC TTGAAGCAGT ATGTCCTGGA GTTGTTTCAT GTGCTGACCT TCTCGCCCTT GCTGCTAGAG CTTCTAGTGT ACTGAGTGGT  GGACCGAGCT GGGAGGTTGC AGTGGGGAGG AGAGACTCGA GGACAGCAAG CCTAAGCCTT TCAGACGCCA ACGTGCCCGC ACCAAACTCT ACTTTCCAAA CCCTTCTCCA ACAATTCAGT  AAACAGGGGC TTGATGAAGT CGACCTGGTT GCACTATCAG GGAGTCACAC ACTTGGAATG GCAAGATGTG TGACTTTCAG GCAGAGACTG TACAACCAGA ATGGAAATGG GCAACCAGAT  GCTTCTCTAG AGGGAGATTT CTATAACAGG CTGACATCAT GTTGCCCAAG TTCAGGTGGA GACAATAATC TCTCTCCTTT GGACATGGTG AGCCCCACAA AGTTCGATAA CTACTATTAC  AAGCTGCTCC TTTGGGGAAA GTCGCTTCTG AATTCAGATA TGGTGCTAGT TACTGAAGTG GGGGGCAAGA CCTTGGTCCA GAGCTATGCA GAAAATGAAG ACCTCTTCTT TGATCAATTT 
GCAAAGGTGA AAATGGGTAA CCTTAACCCT CTCCTTGGAA GCCAAGGGGA AGTAAGAACT CGCCTAGCTA ACTAA 

Retrieve as FASTA