Entry information : AtrPrx[P]87(AmTr_v1.0_scaffold00029.221 / AmTr_v1.0_scaffold00029.222)
Entry ID 16672
Creation 2020-11-09 (Christophe Dunand)
Last sequence changes 2020-11-10 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2020-11-12 (Christophe Dunand)
Peroxidase information: AtrPrx[P]87(AmTr_v1.0_scaffold00029.221 / AmTr_v1.0_scaffold00029.222)
Name AtrPrx[P]87(AmTr_v1.0_scaffold00029.221 / AmTr_v1.0_scaffold00029.222)
Class Class III peroxidase     [Orthogroup: Prx011]*
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx[P]87
start..stop
S start..stop
AtrPrx30 580 0 1..305 23..324
AtrPrx60 535 0 1..305 20..321
AtrPrx28 534 0 1..305 20..321
AtrPrx45 532 0 1..305 20..321
Literature and cross-references AtrPrx[P]87(AmTr_v1.0_scaffold00029.221 / AmTr_v1.0_scaffold00029.222)
Protein sequence: AtrPrx[P]87(AmTr_v1.0_scaffold00029.221 / AmTr_v1.0_scaffold00029.222)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   304
PWM (Da):   %s   32065.6  
PI (pH):   %s   4.84
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MLLLCEGQQL STNLYDSSCP DALSTIRTAI RTAISAERRM GASLIHLHFH DCFVNGCDAS LLLDSTSSFE SEQNAIQNID SARGYHVIEN AMSRVESICP GVVSCSDILA VAARDSSVAx  xxMGGPSWTV NLWRRDSATA SKDEAERELS LFTAPLDDLI SLFGR*GLSA KDMVALSGAH TIGQAQCFTF RDRIYNHTNI DAGFAxxxRG NCPSTGGDSN LAALDLVTPT SFDNNYFKIL 
MQKKGLLESD QVLLNGGSTD DIVRSYSNSR SAFYSDFAPA MVKMGDIEPL TGSAGQIRAR CSVPN* 

Retrieve as FASTA  
Remarks Incorrect prediction from Phytozome (two independant predictions: scaffold00029.221 (5' end) and scaffold00029.222 (3'end)). Stop in frame and frame shift in last exon.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCTGTTAC TATGTGAAGG GCAACAGCTG AGCACCAACC TCTATGATTC GAGCTGCCCC GATGCGCTCT CCACCATCCG CACTGCCATT CGCACTGCGA TTTCGGCGGA GAGGCGCATG  GGAGCCTCCC TTATTCATCT CCACTTCCAT GATTGCTTTG TCAATGTGAG TTCTTGATCT TTCTGTTTAA CAATTCTCAT CTACCTATCT ATTCATCTAT GAGTCTGAAT TCTTTTTTGC  TATTTATCAA GCTTGGTCTA TCGTATGAAT GTGTGTGATC TTAGATGTAA CTGTGGATAT CTATATGCAG GGGTGCGATG CATCGCTGCT GTTGGACTCG ACTTCCTCTT TCGAGAGCGA  ACAGAATGCC ATTCAGAACA TTGACTCTGC TAGAGGCTAC CATGTCATCG AAAACGCAAT GTCGAGAGTG GAAAGCATAT GCCCAGGCGT GGTCTCCTGC TCCGACATCC TTGCAGTTGC  AGCTAGAGAC TCTTCTGTAG CGGTAAACAT ATCCAAACAG ACCAGTTCAT CACGGTTCAT GAGTGTGGTT CACAAATTTC AAAAGGAAAA GGAAAAGTAT ACGTTTAGAC TATTTGGCGG  TTAGAATCAA TCTCGGCTAT TAGGCGCAAA ATTAGGTAGT TGTAGGTATC CTATTAGCTA TGCTCAAAAT TCAAAATAAA CCTTTCGAAC TTTACTTTGT GACAAGCCTC AAACTAAGAT  TTCACATCCA ACAACTATAG ATATTGTGGG CTCATTGTAC AAATGATAAA TGGTTTTATG GTGCCAATTT AAAACATAAA GAACCTGTTC GTTTTTTTTC TAAATGCCTG CTTCCCAATT  TAAAAAGTTG ACGACACGTC TTCAACCAAA CTTGGAGGTA AAACATCTAT CTAAAATAAG ATTTAAGGGG TTCAAAATAT GATCCTAACA TTCGAGACAT TTGGACCAAC TTGTAAGATG  CACACTGTTG TTCAGATTTT TCCCAACAAT TTTGATTTTT TTCTTCTACG ATTATGATTT CAATTTCAAA CATGTGTCTC AACACTTGAG GATTTTAGCC TTCTATTTTT CAAATGAAAA  ACCAAGATTA GAATTAATAA CTGATGAAGA AATAATTCTC TACAGATGGG AGGTCCATCC TGGACAGTGA ACCTATGGCG CAGAGACTCT GCAACTGCAA GCAAAGATGA GGCAGAGAGA  GAACTTTCTC TCTTCACTGC TCCCTTGGAT GATCTCATCT CTCTCTTCGG CAGATAGGGA CTCAGTGCCA AAGACATGGT TGCTCTCTCC GGTGCACACA CCATAGGCCA AGCCCAGTGC  TTCACATTCA GAGACAGAAT TTACAACCAC ACCAACATCG ATGCCGGCTT TGCCGTGGTA ACTGCCCTTC AACTGGAGGG GACTCCAACC TCGCAGCTCT TGACCTTGTT ACACCCACCA  GCTTCGACAA CAACTACTTC AAGATTTTGA TGCAGAAAAA GGGTTTGTTG GAATCGGATC AGGTGTTGCT TAATGGTGGA TCGACTGATG ACATAGTGAG GTCTTATAGT AACAGTCGAA 
GTGCCTTCTA CTCCGATTTT GCGCCGGCTA TGGTGAAGAT GGGGGACATT GAACCTCTTA CTGGATCAGC AGGGCAGATC AGGGCAAGGT GCTCTGTGCC CAATTGA 

Retrieve as FASTA