Entry information : TsPrx04-2 (Thhalv10023814m / ThPrx04-2)
Entry ID 1674
Creation 2006-03-22 (Christophe Dunand)
Last sequence changes 2011-11-25 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-11-17 (Christophe Dunand)
Peroxidase information: TsPrx04-2 (Thhalv10023814m / ThPrx04-2)
Name (synonym) TsPrx04-2 (Thhalv10023814m / ThPrx04-2)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer Salt stress
Repressor N/D
Best BLASTp hits
Perox score E-value TsPrx04-2
start..stop
S start..stop
TsPrx04-1 639 0 1..316 1..316
BrPrx04-1Aa_other 605 0 1..316 1..317
BstrPrx77 600 0 1..316 1..316
AlyPrx04 599 0 1..316 1..316
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '1674' 'complement(join(250177..250568,250662..250830,251211..251402,251476..251673))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 251476..251673 196 N° 2 251211..251402 190 N° 3 250662..250830 167 N° 4 250177..250568 390
complement(join(250177..250568,250662..250830,251211..251402,251476..251673))


exon

Literature and cross-references TsPrx04-2 (Thhalv10023814m / ThPrx04-2)
DNA ref. Phytozome 12:   scaffold_8 (251673..250177)
Protein sequence: TsPrx04-2 (Thhalv10023814m / ThPrx04-2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316 (297)
PWM (Da):   %s   34187.15 (32093.0)  
PI (pH):   %s   8.25 (8.20) Peptide Signal:   %s   cut: 20 range:20-316
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAIFKILVLLLSLSCFCQAQLSSTFYDQRCPNALSTIRSSIRTAI
SRERRMAASLIRLHFHDCFVN
GCDASVMLVATPTMESERDALANFQSARGFEVIDQAKSAVERVCPGVVSCADIIAVAARDASEYVGGPRYAVKVGRRDSTAAFRAIADSGDLPNFTASLNELSDLFLRKGLNTRDLVALSGAHTLGQAQCVTFKQRLYDNSSDIDAGFSSTRKRRCPVEGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLATDQVLFGTGASTDNIVSEYSRNTARFASDYAAAMIKMGDIQTLTGSAG
QIRRICTAVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCATCTTCAAGATTCTTGTGTTGTTGCTAAGCTTGTCTTGTTTCTGCCAAGCACAACTTTCTTCTACTTTCTACGACCAAAGATGTCCAAATGCTCTCTCAACGATCCGATCCTCA
ATCCGAACCGCCATCAGCCGCGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGATTGCTTCGTAAAT
GTATGTCATTAACATTTTGATCTAACATGCGTGTGTGTTCAT
GGACCGCTCTAAAATTTGTATTTTTTTGTAGGGGGTTGTGATGCATCGGTCATGCTTGTGGCAACTCCTACCATGGAGAGTGAGAGAGATGCGTTAGCAAACTTTCAATCAGCGAGAGGA
TTTGAAGTTATTGATCAAGCCAAATCTGCTGTTGAGAGAGTCTGTCCTGGTGTCGTTTCTTGTGCTGATATCATTGCCGTTGCCGCTAGAGACGCTTCTGAATAC
GTAAGTATTTATCAG
TATCTGTAGCCATACGCATTGACATATGTCAGATATATTTACATGGTTAAATTTTATTTTTGATATTTGTAAGAAATATATATTTCATTTTTAACATAATCTTATGTAAGTACTGAATGA
ATTGTTCATTCCATTTTGTGTTTGAATTTTGCATATACAACTTTTATTTTTACAAGTCTCCATGTTAAAACTCTAAAGTATTTTATTTGAGAAAAAAATAAACACTATCTATTATAACAT
TAACATCTAAACGTAAAGATAAAAGAAATTGAGGTCATACGATATGCATTATACATCAGCTTTTTCAATTTGTTTTCTCGTAGTTCTAATAATTCTTTAATATGTAAATTTGGTGTCATC
AATAGGTGTCGGAGGTCCACGATACGCAGTAAAGGTTGGTCGGAGAGATTCCACCGCCGCGTTTAGAGCTATTGCAGACAGCGGCGATCTCCCCAACTTCACGGCAAGCCTCAACGAACT
CTCTGATCTCTTCCTTCGAAAAGGTCTCAACACTAGAGACCTCGTCGCTCTCTCAG
GTCAGTCCCCAAAAACAAATTCTTACTCGCTAATTTGTTTTAATTACTATATTTTAAGAAATTT
CTTGTGACACAAGCAACTTCTATTTGCAGGAGAGCTCACACCTTAGGGCAAGCTCAATGCGTCACGTTCAAGCAAAGGCTTTACGACAACTCGAGCGACATTGATGCCGGATTCTCTAGC
ACACGTAAGCGTCGCTGTCCGGTAGAAGGTGGAGATACGACCCTAGCACCTCTAGATCAAGTGACACCAAATTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAGGACTT
TTGGCGACCGATCAGGTTTTGTTCGGAACCGGGGCTTCTACAGACAATATTGTGTCGGAATATAGCAGAAACACAGCTCGATTCGCGTCTGATTACGCAGCTGCAATGATCAAGATGGGA
GATATTCAGACACTCACTGGCTCAGCTGGTCAAATCCGGAGGATCTGCACTGCTGTTAATTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCATCTTCAAGATTCTTGTGTTGTTGCTAAGCTTGTCTTGTTTCTGCCAAGCACAACTTTCTTCTACTTTCTACGACCAAAGATGTCCAAATGCTCTCTCAACGATCCGATCCTCA
ATCCGAACCGCCATCAGCCGCGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGATTGCTTCGTAAAT
GGTTGTGATGCATCGGTCATGCTTGTGGCAACTCCTACCATG
GAGAGTGAGAGAGATGCGTTAGCAAACTTTCAATCAGCGAGAGGATTTGAAGTTATTGATCAAGCCAAATCTGCTGTTGAGAGAGTCTGTCCTGGTGTCGTTTCTTGTGCTGATATCATT
GCCGTTGCCGCTAGAGACGCTTCTGAATAC
GTCGGAGGTCCACGATACGCAGTAAAGGTTGGTCGGAGAGATTCCACCGCCGCGTTTAGAGCTATTGCAGACAGCGGCGATCTCCCCAAC
TTCACGGCAAGCCTCAACGAACTCTCTGATCTCTTCCTTCGAAAAGGTCTCAACACTAGAGACCTCGTCGCTCTCTCAG
GAGCTCACACCTTAGGGCAAGCTCAATGCGTCACGTTCAAG
CAAAGGCTTTACGACAACTCGAGCGACATTGATGCCGGATTCTCTAGCACACGTAAGCGTCGCTGTCCGGTAGAAGGTGGAGATACGACCCTAGCACCTCTAGATCAAGTGACACCAAAT
TCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAGGACTTTTGGCGACCGATCAGGTTTTGTTCGGAACCGGGGCTTCTACAGACAATATTGTGTCGGAATATAGCAGAAAC
ACAGCTCGATTCGCGTCTGATTACGCAGCTGCAATGATCAAGATGGGAGATATTCAGACACTCACTGGCTCAGCTGGTCAAATCCGGAGGATCTGCACTGCTGTTAATTAA

Retrieve as FASTA