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Entry information : GbPrx[P]88(Ginbil_Gb_13824)
Entry ID 16754
Creation 2020-11-26 (Christophe Dunand)
Last sequence changes 2020-12-09 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2020-12-09 (Christophe Dunand)
Peroxidase information: GbPrx[P]88(Ginbil_Gb_13824)
Name GbPrx[P]88(Ginbil_Gb_13824)
Class Class III peroxidase     [Orthogroup: Prx009]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type
Inducer
Repressor
Best BLASTp hits
Perox score E-value GbPrx[P]88
start..stop		 S start..stop
PgPrx01 428 9.96e-152 3..338 1..322
GbPrx38 424 1.17e-149 11..343 14..342
PabPrx118 421 5.9e-149 45..342 29..321
PtaPrx09 419 3.1e-148 45..342 32..324
Literature and cross-references GbPrx[P]88(Ginbil_Gb_13824)
Protein sequence: GbPrx[P]88(Ginbil_Gb_13824)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   343 (315)
PWM (Da):   %s   36300.58 (33453.0)  
PI (pH):   %s   9.55 (9.39) Peptide Signal:   %s   cut: 29 range:29-343
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMIASTKTIF VSAVIVAVLS LALSSVQSEG GTPTATDSSL IRRGFYRRTC PRVEIIVRES VAKYISKAPS LAASLLRMHF HDCFVRGCDG SILLNSTGSS KKSEKDAFPN LSLRGYQVID  AAKEEVEKQC PGVVSCADIL TLAARDAVHM LGGPVWRVPT GRRDGVVSFQ NEVLANLPPP FANFQQLKSS FASKGLNVKD LVVLSGAHTL GNSHCTSFDN RIYNFTGKGD MYPSLDTFYA 
QKLRTKxxxx xxxxxxIVEM DPGSFRTFDN HYYLNLNKKR GLFQSDAALL TDPFANSLIN SLLAQGSTPF FFDFATSMEK MGRIGVLTGN AGEIRRHCAR LNS 

Retrieve as FASTA  
Remarks Pseudogene from genomic (incorrect prediction from SymDB, large part of last exon is missing). Frame shift in the last exon
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGATTG CAAGCACAAA GACTATCTTC GTTTCAGCAG TCATAGTTGC TGTACTGTCG CTTGCATTAA GCTCTGTGCA GTCAGAGGGT GGCACTCCCA CTGCCACCGA TAGCAGTCTG  ATCAGGCGGG GCTTTTACAG ACGGACATGC CCAAGGGTTG AGATTATCGT TAGAGAGAGT GTTGCCAAAT ACATAAGCAA GGCCCCATCG CTCGCAGCTT CTCTTCTGAG GATGCATTTC  CACGACTGCT TCGTGAGGGT ACTGAGTATT AAATCCATGC AGATTAATTC AATGCTTGTA TTACATTACA TTATGATATT TGCCTTTTTC TTCGTAGCTG ATTATAACTA TGATTATGAT  AGTTGCTAAT TTAATGCAAA TCATGGGTGC AGGGATGTGA CGGATCGATT CTGTTGAATT CAACGGGAAG CAGCAAGAAA AGTGAGAAGG ATGCTTTTCC AAACCTGAGT TTGAGAGGAT  ATCAAGTTAT TGACGCTGCC AAGGAGGAAG TTGAAAAGCA GTGCCCTGGT GTGGTGTCTT GTGCAGACAT ACTTACACTT GCTGCGCGGG ATGCAGTGCA TATGGTAAGT AGTGCTTGCA  ACTTAATTAC ATCGACTGTG GATTTGCATG TATTCGTCAA ATGCAGCTAA TTGTCCCCTG CATCCACCTT GCAGCTTGGA GGTCCGGTTT GGAGGGTTCC CACCGGACGA AGGGATGGCG  TGGTATCATT CCAGAATGAG GTGTTGGCCA ACCTTCCTCC GCCATTTGCA AATTTCCAGC AGCTAAAGTC CTCTTTCGCA AGTAAGGGTC TGAATGTGAA GGACCTGGTT GTGCTCTCAG  GTGCACACAC TCTCGGCAAC TCTCATTGCA CTTCCTTCGA CAACAGGATT TACAATTTCA CCGGTAAAGG AGACATGTAT CCTTCCCTTG ACACTTTCTA CGCACAGAAG CTCAGAACAA  AATGCAATCC CGGAGACAGA AGCAAATAGT AGAAATGGAT CCCGGCAGCT TCCGAACCTT CGACAACCAT TACTATCTTA ATTTGAACAA GAAGAGAGGA CTCTTTCAAT CGGATGCTGC  ACTCCTCACA GATCCCTTTG CAAATTCCTT GATAAATTCT CTGCTCGCCC AAGGATCTAC ACCATTCTTT TTCGACTTCG CCACATCCAT GGAAAAGATG GGCAGGATTG GCGTTCTTAC 
GGGGAATGCT GGAGAGATCC GACGCCATTG CGCTCGTCTT AATTCCTCCT GA 

Retrieve as FASTA