Entry information : GbPrx[P]87(Ginbil_Gb_35363)
Entry ID 16756
Creation 2020-11-26 (Christophe Dunand)
Last sequence changes 2020-12-09 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2020-12-09 (Christophe Dunand)
Peroxidase information: GbPrx[P]87(Ginbil_Gb_35363)
Name GbPrx[P]87(Ginbil_Gb_35363)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type
Inducer
Repressor
Best BLASTp hits
Perox score E-value GbPrx[P]87
start..stop
S start..stop
PabPrx111 213 2e-69 1..203 99..300
PtaPrx65 212 4e-69 1..203 102..303
PtaPrx64 211 1e-68 1..203 102..303
PabPrx79 211 1e-68 1..203 102..303
Literature and cross-references GbPrx[P]87(Ginbil_Gb_35363)
Protein sequence: GbPrx[P]87(Ginbil_Gb_35363)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   200
PWM (Da):   %s   22352  
PI (pH):   %s   4.42
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
DVINDIKMQV DNSCSGVVSC FDILAIAARD GVYLVWPSWE VLLGRCDSIM AILNYANTNI PSPTFNVNDL ISNFQAQGLS QHDMVTLLGG HAIGQACYTT FRERIYNEIT IDQGLKQ*S* 
MNYTSVRGEN NLLPLDMLIP T*FNNDYYKN LQAKKGLLHI DQVLFSNSIS TIYNLMQSYI KSENTLFDDF MIAMVNMGNI NPL 

Retrieve as FASTA  
Remarks Pseudogene from genomic (found in scaffold715 , end exon 2, exon 3 and start exon 4). Incorrect prediction from SymDB.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAAGTAG ATAATTCTTG TAGTGGTGTA GTTTCATGTT TTGATATCCT CGCAATTGCA GCTCGTGATG GGGTTTATTT GGTATGGCCA TCATGGGAAG TTTTGTTAGG AAGATGTGAC  TCTATAATGG CTATCTTAAA TTATGCAAAT ACAAACATTC CATCCCCCAC ATTCAATGTC AATGATCTCA TTTCCAATTT TCAAGCCCAA GGGCTTTCAC AGCACGATAT GGTCACACTC  TTAGGGGGTC ATGCCATTGG ACAAGCATGT TACACTACGT TTAGAGAGAG GATATATAAT GAAATAACTA TAGACCAAGG ACTTAAACAA ATAGATGAAT TATCTGTGAG GGGTGAAAAT 
AATCTATTGC CTTTGGACAT GCTGATTCCT ACCTAG 

Retrieve as FASTA