Entry information : PabPrx03(PAB00052965 / MA_73034g0010 / px3)
Entry ID 1677
Creation 2006-11-07 (Christophe Dunand)
Last sequence changes 2015-12-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2021-04-22 (Christophe Dunand)
Peroxidase information: PabPrx03(PAB00052965 / MA_73034g0010 / px3)
Name PabPrx03(PAB00052965 / MA_73034g0010 / px3)
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Picea
Organism Picea abies (Norway spruce)    [TaxId: 3329 ]
Cellular localisation N/D
Tissue type Xylem
Inducer Lignification
Repressor N/D
Best BLASTp hits
Perox score E-value PabPrx03
start..stop
S start..stop
PabPrx58 644 0 1..351 1..351
PtaPrx88 626 0 1..351 1..351
PtaPrx48 623 0 1..351 1..351
PtaPrx23 592 0 3..351 16..366
Literature and cross-references PabPrx03(PAB00052965 / MA_73034g0010 / px3)
Literature Marjamaa,K. et al., Cloning, characterization and localization of three novel class III peroxidases in lignifying xylem of Norway spruce (Picea abies). Plant Mol. Biol. 61 (4-5), 719-732 (2006)
Protein ref. UniProtKB:   Q5W5I2
mRNA ref. GenBank:   AJ566203.1
Protein sequence: PabPrx03(PAB00052965 / MA_73034g0010 / px3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   351 (329)
PWM (Da):   %s   37946.9 (35531.6)  
PI (pH):   %s   5.93 (5.02) Peptide Signal:   %s   cut: 23 range:23-351
Sequence
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Send to Peroxiscan
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MAKHITPLAS VILCMFVIYG RAVHSLPTPV AGLSWTFYST SCPSLESIVR QRMGAYLSAD ITQAAGLLRL HFHDCFVQGC DGSVLLNSTS GEQTTPPNLS LRAQAFKIIN DIKQHVEAAC  SGIVSCADIL ALAARDSVAM AGGPFYPIPF GRRDSLTFAN LSTTLANLPS PTSNVTVLIS VLGPKGLTFT DLVALSGGHT IGRSNCSSFQ NRLYNSTTGI SMQDSTLDQN FAKNLYLTCP 
TNTSVNTTNL DILTPNVFDN KYYVDLLNEQ TLFTSDQSLY TDTRTRDIVK SFALNQSLFF QQFVLSMLKM GQLDVLTGSE GEIRNNCWAA NPSTYSIIDS EASQESPSYS M 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 1 mRNA. Incorrect prediction due to NN in the sequence.
DNA
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ATGGCCAAGC ATATCACGCC TCTGGCTTCT GTTATCCTCT GCATGTTTGT GATATATGGT CGCGCTGTCC ATTCTCTGCC AACTCCCGTG GCGGGTCTTT CGTGGACGTT CTACAGCACG  AGCTGCCCGT CATTGGAGTC GATAGTGCGG CAGCGCATGG GAGCCTATTT GAGTGCAGAC ATCACACAGG CTGCAGGATT GTTAAGGCTC CACTTCCACG ACTGCTTTGT CCAGGTATAA  TTATGCTACC CAGCAATAAG CAACTTGTTA GGCAGTATTC AATGATGTGG TGTGTGGTAT ATAATATATA GATAAAGATA TATTTTATCA TGTATATAAA AAGTATTTTA ATATATAAGT  ATGATTAAAT CACCTTAATA TATAGGTAGA GATATATTTT ATCATGTATA TAAAAAATAT TTTAATATAT AAGTCTAGAT ATATCTGATC ATGTATACAT CACCTATAGC AGAAGTACAT  AGCATAGAAT ATTAAAGCAA AGTTGAATAT TGTTACAAGT GAATATAGGC AGTAGAATTT GAATTGCTTT TAGACCTATA ATCCACCTAC CTAGGCATTC AACACTGCAT AGCAAATAAC  TGAATATTAC TAGGGACTGT TCCTGTTTTT CAGATATTAA CATGTATACT TTTTATTTTT TATATTGTTG ATACTTGATT TTTTATTTTT ATACCCAATT AAAGTAGAAC TCTGGTTTAG  GTTATGCGAT AGAAGATGTT TGACATTTTA GTTCTTCAAT AAAATCAACT ATAAAAACTA AAACACCCTC ATCTTCCTCC AGACAAAAGG CTTTTACTCC GACCGAAATT TGTATTTAAA  TTAATCCCAA CTACTGAACC ATAATGCTTA GTTATTAATT AATACATCTT ATTGGTTACA GGGATGCGAC GGGTCCGTGT TGTTGAATTC AACGTCGGGT GAGCAAACAA CTCCTCCAAA  CTTATCACTG AGAGCGCAGG CTTTCAnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnGACA GCCTTACTTT CGCCAATTTA TCGACCACTC  TCGCCAATTT GCCATCCCCA ACCTCCAATG TAACGGTGCT TATCAGTGTT TTGGGTCCCA AAGGCTTGAC TTTCACAGAT CTGGTGGCTC TCTCAGGTAC TGTTAGCTAA TAAACATCTT  TCCTTCTACC TTTTCTAATC TCTGTGGAAA TTGCAATGTT CATGACAAAC TCCGTGTATT GATTTGTGTG CAATATTATT ACTATTTTGT GTGTGATCAG GAGGACATAC AATTGGCAGA  AGCAACTGTT CCTCCTTCCA AAACAGACTA TATAACAGCA CCACTGGTAT AAGTATGCAG GATTCCACTT TGGACCAGAA TTTCGCTAAG AATCTTTACC TCACCTGCCC TACCAATACC  AGCGTTAACA CCACCAACCT GGATATCCTC ACTCCAAATG TATTCGACAA CAAATACTAC GTCGACCTGC TCAACGAACA GACTCTTTTC ACGTCCGACC AGAGTCTCTA CACCGACACT  CGAACCCGGG ACATTGTCAA AAGCTTTGCT CTGAATCAGA GCCTCTTCTT CCAACAGTTT GTGCTCAGCA TGCTTAAAAT GGGCCAGCTG GATGTGCTCA CAGGAAGCGA GGGAGAGATC 
CGTAACAACT GCTGGGCTGC CAATCCTTCA ACATACTCGA TCATCGATTC AGAGGCATCT CAAGAATCGT CTTCCTACTC TATGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
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ATGGCCAAGC ATATCACGCC TCTGGCTTCT GTTATCCTCT GCATGTTTGT GATATATGGT CGCGCTGTCC ATTCTCTGCC AACTCCCGTG GCGGGTCTTT CGTGGACGTT CTACAGCACG  AGCTGCCCGT CATTGGAGTC GATAGTGCGG CAGCGCATGG GAGCCTATTT GAGTGCAGAC ATCACACAGG CTGCAGGATT GTTAAGGCTC CACTTCCACG ACTGCTTTGT CCAGGGATGC  GACGGGTCCG TGTTGTTGAA TTCAACGTCG GGTGAGCAAA CAACTCCCCC AAACTTATCA CTGAGAGCGC AGGCTTTCAA GATTATCAAC GACATCAAAC AGCACGTAGA AGCCGCCTGC  AGCGGAATTG TGTCGTGTGC CGACATTCTT GCCTTAGCGG CCCGTGACTC CGTTGCGATG GCTGGAGGGC CGTTCTATCC CATACCATTC GGCCGCAGGG ACAGCCTTAC TTTCGCCAAT  TTATCGACCA CTCTCGCCAA TTTGCCATCC CCAACCTCCA ATGTAACGGT GCTTATCAGT GTTTTGGGTC CCAAAGGCTT GACTTTCACA GATCTGGTGG CTCTCTCAGG AGGACATACA  ATTGGCAGAA GCAACTGTTC CTCCTTCCAA AACAGACTAT ATAACAGCAC CACTGGTATA AGTATGCAGG ATTCCACTTT GGACCAGAAT TTCGCTAAGA ATCTTTACCT CACCTGCCCT  ACCAATACCA GCGTTAACAC CACCAACCTG GATATCCTCA CTCCAAATGT ATTCGACAAC AAATACTACG TCGACCTGCT CAACGAACAG ACTCTTTTCA CGTCCGACCA GAGTCTCTAC  ACCGACACTC GAACCCGGGA CATTGTCAAA AGCTTTGCTC TGAATCAGAG CCTCTTCTTC CAACAGTTTG TGCTCAGCAT GCTTAAAATG GGCCAGCTGG ATGTGCTCAC AGGAAGCGAG 
GGAGAGATCC GTAACAACTG CTGGGCTGCC AATCCTTCAA CATACTCGAT CATCGATTCA GAGGCATCTC AAGAATCGCC TTCCTACTCT ATG 

Retrieve as FASTA