Entry information : PbPrx06
Entry ID 1693
Creation 2007-02-14 (Christophe Dunand)
Last sequence changes 2010-06-21 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-06-21 (Christophe Dunand)
Peroxidase information: PbPrx06
Name PbPrx06
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus balsamifera (trichocarpa x deltoides)    [TaxId: 3695 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PbPrx06
start..stop
S start..stop
PtPrx08 313 5e-109 26..177 25..176
PtrePrx03 301 2e-104 26..177 24..175
MePrx06 278 3e-95 28..177 26..175
LjPrx03 266 2e-90 26..177 19..170
Literature and cross-references PbPrx06
Literature Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
EST ref. GenBank:   CA823745.1 [5' end]
Protein sequence: PbPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   177 (147)
PWM (Da):   %s   19503.74 (16138.0) Transmb domain:   %s   i7-29o
PI (pH):   %s   6.75 (6.25) Peptide Signal:   %s   cut: 31 range:31-177
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAMYYTSGRT FAAPPCIFLL LPLLLQFYSG KSELQFNYYA QSCPRAEEII KEQVIKLYNK HGNTAVSWVR NLFHDCIVKS CDASLLLETV NGIESEKASQ RSLGMRNFKY VNTIKAALES 
ECPVTVSCAD IVTLSARDGI VMLGGPRVEM KTGRRDSTES YGAVVEDFIP NHNDSxS 

Retrieve as FASTA  
Remarks Partial sequence from 2 ESTs. 3'is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACTATTGGCC GGGGACACnA ATATCAATTC GGGAGCTCCC TATTAAGCAG AAAAGACnAT GGCAATGTAT TACACATCGG GACGCACTTT TGCAGCTCCA CCTTGTATCT TTCTTTTATT  GCCCTTACTC TTGCAATTTT ATTCTGGTAA AAGTGAGCTC CAATTCAATT ACTACGCGCA AAGCTGCCCA AGAGCTGAAG AGATCATCAA AGAACAAGTC ATTAAGCTGT ACAATAAACA  TGGAAACACA GCTGTTTCAT GGGTCAGGAA TCTCTTCCAT GATTGCATAG TCAAGTCATG CGATGCGTCA CTCTTGCTGG AGACCGTGAA TGGAATTGAA TCAGAGAAAG CATCGCAAAG  GAGCCTTGGA ATGAGGAATT TTAAGTACGT AAACACCATA AAAGCGGCCC TGGAGAGTGA ATGCCCTGTG ACAGTCTCTT GTGCTGATAT TGTTGCTCTT TCAGCTAGAG ACGGCATTGT 
CATGTTAGGA GGACCGAGGG TCGAGATGAA AACAGGGCGG AGAGACAGCA CCGAAAGCTA TGGAGCAGTG GTCGAAGACT TCATCCCTAA TCACAATGAT AGTATnTC 

Retrieve as FASTA