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Entry information : TsCSD01(Thhalv10008927 / Thhalv10009001)
Entry ID 17565
Creation 2022-04-23 (Christophe Dunand)
Last sequence changes 2022-04-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2023-10-30 (Christophe Dunand)
Peroxidase information: TsCSD01(Thhalv10008927 / Thhalv10009001)
Name TsCSD01(Thhalv10008927 / Thhalv10009001)
Class Cu/Zn SOD    [Orthogroup: CSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema
Organism Thellungiella salsuginea (Eutrema salsugineum)    [TaxId: 72664 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TsCSD01
start..stop		 S start..stop
AtCSD01 287 7.19e-102 1..153 1..153
NoffCSD01-1A 283 2.84e-100 1..152 1..152
NoffCSD01-1B 275 3.83e-97 1..152 1..152
ThasCSD01 262 6.97e-92 1..152 1..152
Literature and cross-references TsCSD01(Thhalv10008927 / Thhalv10009001)
Cluster/Prediction ref. Genebank:   18993991
Protein sequence: TsCSD01(Thhalv10008927 / Thhalv10009001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   152
PWM (Da):   %s   15156.43 Transmb domain:   %s   i7-29o
PI (pH):   %s   5.76
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAKGVAVLSS SEGVKGTIFF TQEGQGETTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKQH GAPEDANRHA GDLGNIVVGD DGTATFSITD CQIPLTGPNS IIGRAVVVHA 
DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG* 

Retrieve as FASTA  
Remarks Splicing variant with extra Exon in 5' (MVDILDRFFFTYHKRIQT)
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAAGG GAGTTGCAGT TTTGAGCAGC AGCGAGGGTG TTAAGGGGAC TATCTTCTTC ACCCAGGAAG GACAAGGTAG TTTTGCTTAG AGCGCTTTAA GTTTCTTGAA GCCATCTTTT  ATCTTCTGGA ATCATTAGAA TGGTTTTTGC AGGTGAGACC ACTGTGAGTG GAACAGTTTC TGGACTTAAG CCTGGTCTCC ATGGTTTCCA TGTCCATGCT CTCGGTGACA CCACTAACGG  TTGCATGTCT ACCGGTATTA CTCTCTTTTT ACTTCTGTGA ACACCTTTCT CAAAATTTTT GTATGGATTT AGGAGATGAG GGTATTTGCC TACATGATTT TTATTACTTC AATTGTTTGT  TCGAGGAGCT TATAATTATG TCTCGAAATA GGGAGCTCTA ATCATCCTCA AAGTAATTGA AATTGTTATT AATCCTTTGG TCAATCTCCT TTTCTAGGTC CACATTTTAA CCCTGATGGT  AAACAACACG GTGCCCCCGA GGATGCTAAT CGACATGCTG GCGATCTGGG AAACATCGTT GTTGGAGATG ATGGTATTCT TTCTCAACAT CTGTGTCTCT GGTCTCAAGC TTTTTATTTA  TATTATCTGA AAAACTCTTC ATCCCATATG TTTGCTATTC TCTCTCAAAC GTGGTTTATG CAGCCTTAGT TTTGTAATAC ATGTTTCATC TTTTAACAGC TTTTGTGTTC ATGGGTTTAC  ACAATTTCTT CTTTTTTTTT TTTTTTTTTG CTTTCTCAGG AACTGCCACC TTCTCAATCA CTGATTGCCA GGTTCTTAGC TGTGTATCTA TTTTTTTGTT TATGTTTTCC CTTTTACGGA  ACTGCTATCG TCAACCAATG TTTTGTGTTC GTTTTACAGA TTCCTCTTAC TGGACCAAAC TCTATTATTG GAAGGGCTGT AGTTGTCCAC GCAGACCCTG ACGACCTCGG AAAGGGTGAT  GACCTTTGGC TATTGTTTTT TTTTTTTTTT TAAATCTTTC TTATGTGTGT GTAATTACCT AAATTTACAT TGTCCATAAG ACGACTCTCT AACCTGGACC CTCACTTGGT TTGTTACATT  TTCAGGAGGC CACGAACTCA GCTTGGCAAC TGGAAACGCA GGCGGCCGTG TTGCTTGCGG TATGTAGAAA TAAACCACAT TTTCTTGGAT TTTCTGTGGA AAATCATCTG TGTAAATGAA  TCAAAAGTTG AACTCCTTGA TTTCTGGCAA CTCTTATGTT GAATTTTGGG TTCGTCTGAA AATAAACCAC TTACTACATC ATGTCTGTCT AGATGTATCA TAGTTTTTAA ATGATTAGAA  ATTAACTGTA GGATCGTGGG ACTTCAGTCC ATAGAACCAC ATCTTCTGGA TACTAAGTTT CATTCCTGAT GACTACTCAT TCGATCTAAT AGAGTCGGAG AGAAACAATT GACTGACCTT 
TGGTCTACCA TTTTGCAGGT ATCATTGGTC TTCAGGGCTA A 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAAGG GAGTTGCAGT TTTGAGCAGC AGCGAGGGTG TTAAGGGGAC TATCTTCTTC ACCCAGGAAG GACAAGGTGA GACCACTGTG AGTGGAACAG TTTCTGGACT TAAGCCTGGT  CTCCATGGTT TCCATGTCCA TGCTCTCGGT GACACCACTA ACGGTTGCAT GTCTACCGGT CCACATTTTA ACCCTGATGG TAAACAACAC GGTGCCCCCG AGGATGCTAA TCGACATGCT  GGCGATCTGG GAAACATCGT TGTTGGAGAT GATGGAACTG CCACCTTCTC AATCACTGAT TGCCAGATTC CTCTTACTGG ACCAAACTCT ATTATTGGAA GGGCTGTAGT TGTCCACGCA 
GACCCTGACG ACCTCGGAAA GGGAGGCCAC GAACTCAGCT TGGCAACTGG AAACGCAGGC GGCCGTGTTG CTTGCGGTAT CATTGGTCTT CAGGGCTAA 

Retrieve as FASTA