Entry information : SpPrx108
Entry ID 1771
Creation 2007-09-19 (Christophe Dunand)
Last sequence changes 2007-09-19 (Christophe Dunand)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-05-04 (Christophe Dunand)
Peroxidase information: SpPrx108
Name SpPrx108
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum propinquum    [TaxId: 132711 ]
Cellular localisation N/D
Tissue types Meristems
Rhizomes
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpPrx108
start..stop
S start..stop
SbPrx20 299 1e-101 1..147 1..147
SbPrx20 172 8e-52 213..292 238..317
ZmPrx25 271 9e-91 1..147 1..146
ZmPrx25 163 1e-48 213..292 237..316
SiPrx145 259 1e-85 3..147 4..150
SiPrx145 155 3e-45 213..292 241..320
ZmPrx138 253 2e-83 8..147 1..141
ZmPrx138 147 3e-42 213..292 226..306
Literature and cross-references SpPrx108
Literature Cordonnier-Pratt,M.-M., Gingle,A., Sudman,M., Marsala,C. and Pratt ,L.H. An EST database from Sorghum: floral-induced meristems.
EST ref. GenBank:   BG560549 [5' end]   BG559945 [3' end]
Protein sequence: SpPrx108
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   292 (267)
PWM (Da):   %s   24759.22 (22293.0)  
PI (pH):   %s   6.65 (6.34) Peptide Signal:   %s   cut: 26 range:26-292
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASRGSSMAC SLQLAVLMFA AVALGFGVRA GAAELCSEYY DQTCPDVHRV VRRVLKKAHE ADVRIYASLT RLHFHDCFVQ GCDGSILLDN SSSIVSEKFA TPNNNSARGY PVVDAVKAAL  EEACPGVVSC ADILAIAAKI SVELSGGHGG AFLSxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxLRCPRGGN ASALNDLDPT TPDTFDNNYY 
TNVEARRGTL QSDQELLSTP GAPTAPIVGR FAGSQKEFFK SFTRSMINMG NI 

Retrieve as FASTA  
Remarks Partial sequence from 3 ESTs. No overlap between 5' and 3' ends but compiled based on homologies with S. bicolor sequence. Rhizome2 (RHIZ2), Floral-Induced Meristem 1 (FM1).