RedOxiBase: View Perox 1772

Entry information : SpPrx09

Entry ID	1772
Creation	2007-09-19 (Christophe Dunand)
Last sequence changes	2007-09-19 (Christophe Dunand)
Sequence status	partial
Reviewer	Qiang Li
Last annotation changes	2011-01-28 (Qiang Li)

Peroxidase information: SpPrx09

Name

SpPrx09

Class

Class III peroxidase [Orthogroup: Prx002]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum propinquum [TaxId: 132711 ]

Cellular localisation

N/D

Tissue type

Meristems

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpPrx09 start..stop	S start..stop
ZmPrx05	270	2e-90	144..284	179..319
ZmPrx05	183	2e-56	6..110	1..105
SbPrx12	267	4e-89	144..284	185..325
SbPrx12	209	2e-66	1..110	1..110
SiPrx164	241	4e-79	144..284	184..323
SiPrx164	198	4e-62	1..110	1..109
TaPrx36-1A	222	2e-71	144..283	194..333
TaPrx36-1A	171	8e-52	11..110	14..119

Literature and cross-references SpPrx09

Literature	Cordonnier-Pratt,M.-M., Gingle,A., Sudman,M., Marsala,C. and Pratt ,L.H. An EST database from Sorghum: floral-induced meristems.
EST ref.	GenBank: BF588081 [5' end] BF587525 [3' end]

Protein sequence: SpPrx09

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	284 (342)
PWM (Da):	26198.01 (37874.6)
PI (pH):	5.64 (9.87)	Peptide Signal:	cut: 23 range:23-364

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAVQRMEVLY LQVAAVAALL MATELRAQLR VGFYDNSCPA AEIIVQQEVS TAVAANPGIA AGLLRLHFHD CFVGGCDASV LIDSTKGNTA EKDAGPNTSL RGFEVIDRIK xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxQKEMVIL SGAHTIGSSH CSSFSGRLSS SATTAGQDPT MDPAYVAQLA RQCPQAGGDP LVAMDYVSPN AFDEGFYKGV MANRGLLSSD QALLSDKNTA
VQVVTYANDP ATFQSDFAAA MVKMGTVGVL TGASGKIRAN CRVA

Retrieve as FASTA

Remarks

Partial sequence from 2 ESTs. No overlap between 5' and 3' ends but compiled based on homologies with S. bicolor sequence. Floral-Induced Meristem 1 (FM1).