Entry information : NtPrx[P]02-1A(Nitab4.5_0006545g0020)
Entry ID 1862
Creation 2005-07-11 (Christophe Dunand)
Last sequence changes 2011-04-20 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2022-10-06 (Christophe Dunand)
Peroxidase information: NtPrx[P]02-1A(Nitab4.5_0006545g0020)
Name NtPrx[P]02-1A(Nitab4.5_0006545g0020)
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Nicotiana
Organism Nicotiana tabacum    [TaxId: 4097 ]
Cellular localisation N/D
Tissue type Cell culture
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NtPrx[P]02-1A
start..stop
S start..stop
NtPrx17-1A 243 5e-82 1..136 1..136
NtPrx17-1B 228 3e-76 1..136 1..142
CanPrx02 219 6e-74 4..136 3..135
StPrx04 214 5e-71 4..136 3..135
Literature and cross-references NtPrx[P]02-1A(Nitab4.5_0006545g0020)
EST ref. GenBank:   FG627780.1 [Fragment]
Protein sequence: NtPrx[P]02-1A(Nitab4.5_0006545g0020)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   136
PWM (Da):   %s   15348.76  
PI (pH):   %s   7.42
Sequence 0
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MANNYNQFLL LLLPLLLHIH YVRSELQLNY YSESCPRAEE IIKEQVAQLY HKHGNTAVSW IRNLFHDCMA KSCDASIYLD TANGQESEKA SPKNFGMRNL KYVVCIKKAL ESECPNPVSC 
ADIVVLSARV GLLWVS 

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic and 4 ESTs (FG627108.1, BP133513.1, BP132199.1). Large 3' end are missing and frame shift in the 4 ESTs at the same position ( probably DNA!!!!). Uncorrect prediction from SGN (Only part of exons 1 and 2). Also found in TN90 and BX DNA
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAAAACACTC ATCTTTTCTT TATCTTATAT TTCTAATCTG AAGCGTTATG CCTACTTCTC CCAATGAATA CCTCAATTCA ACAACCAAGA TCTACCCTTA TAAAAAAACA CATCTTGACT  GCAGATTTGA GTAAGAAGTG AACTCCAATT GAACTACTAC TCAGAGAGTT GCCCAAGAGC TGAAGAAATA ATCAAAGAAC AAGTGGCACA GTTGTACCAC AAGCATGGCA ATACAGCAGT  TTCTTGGATC AGAAATCTTT TTCATGATTG CATGGCTAAG TCATGTGATG CATCAATATA TTTGGACACA GCAAATGGAC AGGAATCAGA GAAGGCATCT CCAAAAAACT TTGGAATGAG  AAATTTGAAG TATGTATTAA AAAGGCACTT GAGAGTGAAT GTCCTAGTCC TGTTTCTTGT GCTGATATTG TTGTTCTTTC TGCTAGAGTT GGTCTTCTCT GGGTAAGTTG ATCAAAAGTT  ATTTTATATT GTTAGTGTAT TTTAATTTGT TAAAGTAGAG TTTTAGAGCA ACGGTAAAAT TGTACTCAGC TTGAAAAGAA AAGAAGCCTC AAGTTGATAA GTCATCATGT TCGATAATTT 
CGAAAGAAGA G 

Retrieve as FASTA