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Entry information : OsAPx04(APX4 / LOC_Os08g43560)
Entry ID 1868
Creation 2006-09-05 (Christophe Dunand)
Last sequence changes 2006-09-05 (Christophe Dunand)
Sequence status complete
Reviewer Catherine
Last annotation changes 2022-01-25 (Catherine )
Peroxidase information: OsAPx04(APX4 / LOC_Os08g43560)
Name OsAPx04(APX4 / LOC_Os08g43560)
Class Ascorbate peroxidase    [Orthogroup: APx2003]
Taxonomy Viridiplantae (green plants); Streptophyta; Angiospermae; Monocotyledons
Organism Oryza sativa ssp japonica cv Nipponbare    [TaxId: 39947 ]
Cellular localisation N/D
Tissue types Callus
Flowers
Leaves
Pannicles
Roots
Seeds
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value OsAPx04
start..stop		 S start..stop
SbAPx04 530 0 1..291 1..289
TaAPx06-1B 526 0 1..291 1..291
ScAPx04 526 0 1..291 1..291
HvAPx01 526 0 1..291 1..291
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '1868' 'complement(join(27548328..27548534,27548876..27548978,27549074..27549153,27549245..27549327,27549899..27549947,27550028..27550093,27550254..27550303,27550762..27550886,27551842..27551954))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 27551842..27551954 111 N° 2 27550762..27550886 123 N° 3 27550254..27550303 48 N° 4 27550028..27550093 64
N° 5 27549899..27549947 47 N° 6 27549245..27549327 81 N° 7 27549074..27549153 78 N° 8 27548876..27548978 101
N° 9 27548328..27548534 205  
complement(join(27548328..27548534,27548876..27548978,27549074..27549153,2754924 5..27549327,27549899..27549947,27550028..27550093,27550254..27550303,27550762..2 7550886,27551842..27551954))


exon

Literature and cross-references OsAPx04(APX4 / LOC_Os08g43560)
Literature Kikuchi,S. et al. (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.Science 301 (5631), 376-379.
Protein ref. UniProtKB:   Q6ZJJ1
DNA ref. GenBank:   NC_008401.1 (27551954..27548331)
Cluster/Prediction ref. UniGene:   Os.10609
Protein sequence: OsAPx04(APX4 / LOC_Os08g43560)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   291
PWM (Da):   %s   31590.35 Transmb domain:   %s   o262-284i
PI (pH):   %s   7.68
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPVVDAEYLRQVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLEPIKAKSPKITYADLYLAGVVAVEVTGGPTVEFIPGRRDSSV
CPREGRLPDAKKGALHLRDIFYRMGLSDKDIVALSGGHTGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYVDLYADEDTFFKDYAESHKKLSELGF
TPRSSGPASTKSDLSTGAVLAQSAVGVAVAAAVVIVSYLYEASKKSK*

Retrieve as FASTA  
Remarks Complete sequence from 6 mRNA, 167 ESTs and 1 genomic (Chromo 8, 8 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCCCGGTCGTGGACGCCGAGTACCTCCGCCAGGTCGACAGGGCGCGCCGCCACCTCCGCGCCCTCATCTCCTCCAAGGGATGCGCGCCCATCATGCTCCGCCTCGCGTACGTA
CCTACCGGCCTACCCCCCATCTCCTGCTCCTCCTAGAACCCTCCCCTAGTTCCTAATCCTTGTGATGGATTCGCGCGGCGGTGGCGAGGGAGGGAGCTCTCGTGTGTTTGGATTTGGAGC
CCGCTCGGCTCTGCTTGCCTCGAGTGGTGGGATGAGTTACTGCTGGTGGTGGTGAGATGGGTCGCTTGCGATTGCGAGACTGTATGATTGGGTTTGGTTAGTTGCTTGCGGCGGGTACCT
GCGCTGGTCCGTGGCGTGGCTGTTGGGCGAGGCAATTCGACGAACACCTTGAGTGCGTGCGCGCCTGCTTTGGATGGCTCCCAGATTTGGTTTTGATTGTGTGACTGCGCCTTTGGAATT
AACGAGGAACGGCGGACGATGTTTAGTTCGCTAGTTCACATGTAGAGTGCACGCGTTTTTCTGTTGATCCGTTGGTTCTCTCATACTAGTCAGGAAACTAGCAACCTAGCAGGGGAGAGC
GAGCATTTTTAATCACTCCCCATATTCCGTCATAACGGCAATATCGCAGGAAGCTAAGACGAATTTCTTATTTCTGTCTATAGTAGGTGTTCCACTCCATGAGCTTCGTGTTACATTTGT
GGAGCTGATGAGAGACCAGTGTTACAAACTGGAACAAATAAGTGATGTTTCATTATCTAAAAAAAGGGGATGTTTGCACTACTGCTGCAAATGTTCTATGTATATTGTAATTACGAATGG
ACTCAGAAGAAGCATTACCATTTAACGCACCATTACAGATAGTGCAGCGTGTATTTGCTAATTAATTAGTACTTTATATATGGAATTGTGATTTTTTTTATCTTATATGTTGTATACAGT
GTTCTTCTGTAATGTACTATGAGTTTTTCTCATTTATCATGGAGGATATTCTGCGTGCTCTTGGATTACTCTTGGACTAAAACTTAGTTCCTGTGCACTCCCTTGCAGATATGGCATGAC
GCGGGCACTTATGACGTGAACACAAAAACTGGTGGTGCAAATGGTTCAATTAGATACGAGGAAGAGTACACTCACGGTTCAAATGCTGGTCTAAAGATTGCTATTGATCTTCTCGGTATG
TATTGTTTGTCCCCAATGTGTTCCTAGATGATTAGACGAAAGTAGCTTTCACTTTTCCCCCATTGTCAGAATGGCTCTAGTTCCCTTTAAACCACTCATCAGCTATATGATTGATGCCTC
TTAAGAAATCAATTTGAGTTTTCTTGTCAGTTTCTCAAAATTCTTTTCTTTTTCTATTGTTTTGGGTTTTACCTTGATCGGACTACAAACTAACTCTTTTTTTTCTCTAATTCGGGGATC
AAATATTTTGGGAGAAATAACTAAAAAACAAGAAACTCCCATATTTTTGCAACTATTCTCAATGGTGTTGCAGTACTCACCACTCTTCTCTGTACAATTGCATTATTTACCTGTTCCACG
TTATCTAGTTTATTGTTATATTGTCACTTTATTCAGTGATGAAATAAATCGAATGATTACTTATGCTTCTCCAATTGTCTTTTACTGTAACAGAGAGCCTATTAAAGCCAAGAGCCCTAA
GATCACATATGCTGACCTTTATCAGGTAAATTAGCGTTGCTTGAATTGGTTCTTGTGCTGCCAACTTATTATAAGAGTGCCTTGATACTGTGACATCTTTTTTTTTTCTTGTCGCACATT
TGATCTTTTTTATCTTATCGATTACTGTGTAAATTTTTAAGATCCTAACTAGATTTTTCTTACAGCTCTTGCTGGAGTTGTTGCAGTTGAAGTTACTGGGGGTCCAACTGTTGAGTTCAT
TCCTGGAAGACGTGTACGTGAAATAACATTTCTTTATGAATGGATGCATCTTTTATTGATTCACACTTATTAAGTTCTTTTGACCTGAATCAGGAGATTCGTCAGTTTGCCCCCGTGAAG
GGCGTCTTCCTGATGCTAAGAAAGGTAATTGCCACAAACTATTCTTTGAACTGGTCTACCTTTTCTTTTGTCATTATAATCATGCTTCCTGACTCCTAGTGTTTGAAGCAATGAGTCAAA
ATATGTGTTAGTATTCTACATGTATCACATTTAGTCCCATGCATTTCTCCTGTACTTGTCTGCTAGTACTCATGTTCTGGCATTTAGTACTTAGTGTTGCTTGAGACAACCCAGTTCATG
CAATACATACCGTAATATGTACATTATCTTAAACACACATACATCTCTTCATAGATGGGAGCCTCGTCTTTCATTTATCTTATATTCCTGCATATCTGGTATAGTTGTCATTTAGGTGTC
ATACCAGCAGGTGCTGTTGTATGTCTGGTAATTTGTTTTATGTTATTTATCTGTTTTCCTATTCCTTCTGCCGAAGTCTGTTTTCCTTTCTTACATTTACTGGGATGCAAGGTGCCAGTT
CCTATTTTAGTATTTTAATAACTGGTGCCAGAATCCTGTTTTGATATGTATAATCGTAATCATATATCTATTTTTATGGGGGTATATCTGCATTTTATCTTTGTTTCATGAGCAGGTGTG
CACTGCACTTGAGGGACATCTTTTACCGGATGGGCTTATCAGACAAAGATATAGTAGCTTTATCTGGGGGTCACACTCTGGTAAATGCTCTAATTAATGTAGAATTTGTGTAATGGTAAT
CCTGATTCTTCATGAGAAGCACAGTTTTAACAACTCGCTTTATACTTCAAGGGGGAAGGGCACATCCTGAAAGGTCTGGATTTGAAGGCGCATGGACTCAGGAGCCTCTGAAGTTTGACA
ATTCGTACTTTCTGTAAGTTGAATACAAAACTGGGTCATTTACGTACTAATTCTGGGCACTAGATTTGAGGTTAGAAGATAACAGTGTAATATTTTATTTAACTGCAGTGTGAGCTACTG
AAGGGGGAATCTGAGGGGCTTCTGAAGCTCCCAACTGACAAGGCATTGTTGGAAGATCCTTCATTTAGACGCTATGTGGATCTTTATGCCAGGGTAAAAAGGATCTTTTATATATATATT
TTTTTTCTATTCCTTGCACTTAAAACTCCCCCATTTTATATGCCCTTTCATCCATTTTTTAGGACTATAGGACCATTAACAAACTATAAAGTATTTGAATTTGTTAGTTGAAAATGCAAT
TAATAGATTTATTTATTGTCAAATATGATTTCGGAGCATTATATTTTTACAACTTTTACTGCTATATAATTGGAAGTGAATAATTTTCAAAATGCTACAAGAACTGTGAATATTTCATGC
CGACGTACTATGCCTTGCGGTGCTCCATAATATAAGTTTTACATTCAGAACCATTTCTTCTGTTCATATGGCAGGAGATGAAGACACCTTCTTCAAGGACTACGCTGAATCGCACAAGAA
GCTTTCTGAACTTGGCTTCACTCCACGGAGCAGCGGCCCTGCATCTACGAAATCTGATCTTTCAACTGGTGCTGTACTCGCACAGAGTGCTGTCGGGGTAGCTGTTGCTGCAGCTGTAGT
TATCGTGAGCTACCTATACGAGGCTTCTAAGAAGAGCAAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCCCGGTCGTGGACGCCGAGTACCTCCGCCAGGTCGACAGGGCGCGCCGCCACCTCCGCGCCCTCATCTCCTCCAAGGGATGCGCGCCCATCATGCTCCGCCTCGCATGGCAT
GACGCGGGCACTTATGACGTGAACACAAAAACTGGTGGTGCAAATGGTTCAATTAGATACGAGGAAGAGTACACTCACGGTTCAAATGCTGGTCTAAAGATTGCTATTGATCTTCTCGAG
CCTATTAAAGCCAAGAGCCCTAAGATCACATATGCTGACCTTTATCAGCTTGCTGGAGTTGTTGCAGTTGAAGTTACTGGGGGTCCAACTGTTGAGTTCATTCCTGGAAGACGTGATTCG
TCAGTTTGCCCCCGTGAAGGGCGTCTTCCTGATGCTAAGAAAGGTGCACTGCACTTGAGGGACATCTTTTACCGGATGGGCTTATCAGACAAAGATATAGTAGCTTTATCTGGGGGTCAC
ACTCTGGGAAGGGCACATCCTGAAAGGTCTGGATTTGAAGGCGCATGGACTCAGGAGCCTCTGAAGTTTGACAATTCGTACTTTCTTGAGCTACTGAAGGGGGAATCTGAGGGGCTTCTG
AAGCTCCCAACTGACAAGGCATTGTTGGAAGATCCTTCATTTAGACGCTATGTGGATCTTTATGCCAGGGATGAAGACACCTTCTTCAAGGACTACGCTGAATCGCACAAGAAGCTTTCT
GAACTTGGCTTCACTCCACGGAGCAGCGGCCCTGCATCTACGAAATCTGATCTTTCAACTGGTGCTGTACTCGCACAGAGTGCTGTCGGGGTAGCTGTTGCTGCAGCTGTAGTTATCGTG
AGCTACCTATACGAGGCTTCTAAGAAGAGCAAGTAA

Retrieve as FASTA