Entry information : SiAPx01 (Si037167m)
Entry ID 1993
Creation 2008-06-25 (Christophe Dunand)
Last sequence changes 2011-07-03 (Qiang Li)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-15 (Qiang Li)
Peroxidase information: SiAPx01 (Si037167m)
Name (synonym) SiAPx01 (Si037167m)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Drought
Repressor N/D
Best BLASTp hits
Perox score E-value SiAPx01
start..stop
S start..stop
PamAPx01 505 0 1..250 1..250
SbAPx01 491 4e-179 1..250 1..250
ZmAPx05 487 1e-177 1..250 1..250
ZmAPx01 486 2e-177 1..250 1..250
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49456069..49456187 119 N° 2 49455775..49455949 175 N° 3 49455609..49455674 66 N° 4 49454485..49454533 49
N° 5 49454244..49454329 86 N° 6 49454081..49454160 80 N° 7 49453851..49453953 103 N° 8 49453721..49453779 59
N° 9 49453628..49453643 16  
complement(join(49453628..49453643,49453721..49453779,49453851..49453953,4945408 1..49454160,49454244..49454329,49454485..49454533,49455609..49455674,49455775..4 9455949,49456069..49456187))


exon

Literature and cross-references SiAPx01 (Si037167m)
Literature Zhang,J.P., Liu,T.S., Fu,J.J., Zhu,Y., Jia,J.J., Zheng,J., Zhao,Y., Zhang,Y. and Wang,G.Y. Construction and application of EST library from Setaria italica in response to dehydration stress. Genomics 90 (1), 121-131 (2007).
DNA ref. Phytozome 12:   scaffold_9 (49456187..49453628)
EST ref. GenBank:   EC612205 [Fragment]
Protein sequence: SiAPx01 (Si037167m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251
PWM (Da):   %s   27311.83  
PI (pH):   %s   5.92
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKCYPTVSAEYQEAVEKARRKLRALIAEKSCAPLMLRLAWHSAGTFDVSTKTGGPFGTMKNPAEQAHGANAGLDIAVRMLEPVKEEFPILSYADLYQLAGVVAVEVTGGPEIPFHPGREDKPQPPPEGRLPDATKGSDHLRQVFGKQMGLSDQDIVALSGGHTLGRCHKERSGFEGAWTRNPLVFDNSYFKELVSGDKEGLLQLPSDKALLSDPAFRPLVEKYAADEKAFFDDYKEAHLKLSELGFADA*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 1 EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAAGTGCTACCCGACCGTCAGCGCTGAGTACCAGGAGGCCGTCGAGAAGGCCAGGCGCAAGCTCCGCGCCCTCATCGCCGAGAAGAGCTGCGCCCCCCTCATGCTCCGTCTCGCG
TAAGCCCCGNNNNNNNNNNNNNNNNNNNNNNNNTCCGCTACCTAACCCCGCGCGTGCTTCCGGATCGTCGGCAGTAGTTTTCGGTGGCCTGATCTGGGCTTTCGATTTGGTTGCGCAGGT
GGCACTCGGCGGGGACGTTCGACGTGTCGACGAAGACCGGCGGCCCCTTCGGTACGATGAAGAACCCGGCGGAGCAGGCGCACGGCGCCAACGCGGGCCTGGACATCGCGGTGCGGATGC
TCGAGCCCGTGAAGGAGGAGTTCCCCATCCTCTCGTACGCCGATCTGTACCAG
GTGCGCCCGCGATCTCGCAGCGATCTGGTCGGACGCTTCGATCCGCCCCTAAATGAATGCGGTTTCT
GACGGTTTTTTTGTTCTCTGTTTTGGTGCGTAGCTTGCGGGAGTTGTGGCCGTGGAGGTGACCGGTGGACCTGAGATCCCCTTCCACCCCGGTAGGGAGGTGAGACTTTTCATCCCTTTT
CTACTGCCTTTGGGGTTTTACCTGGGTTTAAGGCCTTGATTCGAAATGTCCAAGGAGGAGAGTGGGAAAGGTAGTATGGTGAGATCCTGGTTGTTTACTCCAATTAGTGCCACCGATTTA
TGAGCGTATTATCATGGGTTTGGTGGGTGCCTCTTATAGACAACCATATCCATTTATTCATGGCACGTGATCTTATAATTTAGTCTTCACATCGGTTTGTTTGAGGTTGGGGCCCATGTC
TTGCTCTTGACAATAATTTTGTCTTATTGCGCTATGGGTTCATTGTTTGCGTGATATGTCTGGTAACGAAATGGTCGGCCTCTGTGATGTCAAAGTAACATAGTAATTTACTGTAATGTC
TGTCCATATATGATATGCAGCTTTCAGTCTGTGCATAGGATTGAAGTTTGTTAATTGTTTGTTTGTACTGATTCATTCCTTGGTTCCTGTTGCATGTGATTGTTGAGTCACACAAATGGA
CCTTATGCATGTTTCATACTTTGTACTATGAGATGTCGCGACTAATCACTTGTCATCAACTTATATGTTACCTAAGATACTGGGTCTAACTTAATCTGTCTCTTTTGTGCTGGTTTTGCA
AATAGAGAATGACAAGAATACTAGATAGCCTTCCTTCTGAATATTAGTGTTGGAATGCTGGATTTATCTTGGGAAAAATCTATTGTTTATCATTTTGTATTCGTTTCATCCATCGGCAAG
CCATGCTCAGCTTTTTATGATATATATTCAATACAACAGGGGCGGAGCCAGTGGAGGCCAAACTGGGCTCCAGGCCCCCCTTGCTGATTCTCTTTTTTGTTTATAGTTGAGCATACTCTC
TTGTGATTAGGCTGATGTACAGCAAAATATTGATACCACCAGACCATTAACTCTCTTGCATAGTGTCAGGTGTCAGTGAACATTTGATGATAACATTGCTCTATGAGACTCTGACAGTGT
TAGTTGTGATAGTCTTATTTGTTCGATGTTTTTTGGGTCATGACAGTGTTTGCTAATGCTCAGTGTATTTACATCTTTCCTTTGTCCTTTTCAGGACAAGCCTCAGCCGCCACCTGAGGG
CCGCCTTCCTGATGCTACTAAGG
GTAGGCCTCTAATCTTTAATACTATTGCCATGAATGTTGAACTGTTTGGTTGTATTCATCATTCTTCCTTGGGGGCTTTGGTGTCGTGTTGAATCTC
ATTTTTAAATTGACACAAGAACCATCACTTACAGCTTGCTTGCTGTCTTCTTACCCAGGTTCTGACCATCTGAGGCAGGTCTTTGGCAAGCAGATGGGCTTGAGTGATCAGGACATTGTT
GCCCTCTCTGGTGGCCACACCTTG
GTTTGTTGCTGTCCACTCATGTTTGCTTCATCATTGTGTAATATGTATGCATGCATTGATGTTGTTTTCTTGTTTTTCTTTAGGGAAGGTGCCACA
AGGAGCGGTCTGGTTTTGAGGGGGCCTGGACTAGAAACCCTTTGGTCTTTGACAACTCTTACTTCAA
GTGAGTCTACAGCTTGTTTAAAAAAGGAATTGGAATTAATTAAGTGATGTTTG
TAACTACCTTTGTTATCTCATTCTAGGCAGTTGAATGTTATTAGACACTAATAAGCCATCCGATATTTCTGTAGGGAACTTGTGAGTGGTGACAAGGAGGGCCTTCTTCAGCTCCCAAGT
GACAAAGCCCTGCTGAGCGACCCTGCCTTCCGCCCTCTTGTGGAGAAATATGCTGCG
GTATGCCTCCAGTTCAATGCATCCAGAGTTTGGAGATATGTAAGAGATGCTAATTGTTGATTG
CGTTACAGGATGAGAAGGCTTTCTTTGATGACTACAAGGAGGCCCACCTCAAGCTCTCTGAACTGGGGTGAGTAACCATTGCCCACTCAATTTTGTGCTTAAGTCGTTGGAACAAATCTG
ATTGTTTTCCTTTGTGGATTGCAGGTTCGCCGATGCATAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAAGTGCTACCCGACCGTCAGCGCTGAGTACCAGGAGGCCGTCGAGAAGGCCAGGCGCAAGCTCCGCGCCCTCATCGCCGAGAAGAGCTGCGCCCCCCTCATGCTCCGTCTCGCG
TGGCACTCGGCGGGGACGTTCGACGTGTCGACGAAGACCGGCGGCCCCTTCGGTACGATGAAGAACCCGGCGGAGCAGGCGCACGGCGCCAACGCGGGCCTGGACATCGCGGTGCGGATG
CTCGAGCCCGTGAAGGAGGAGTTCCCCATCCTCTCGTACGCCGATCTGTACCAG
CTTGCGGGAGTTGTGGCCGTGGAGGTGACCGGTGGACCTGAGATCCCCTTCCACCCCGGTAGGGAG
GACAAGCCTCAGCCGCCACCTGAGGGCCGCCTTCCTGATGCTACTAAGGGTTCTGACCATCTGAGGCAGGTCTTTGGCAAGCAGATGGGCTTGAGTGATCAGGACATTGTTGCCCTCTCT
GGTGGCCACACCTTG
GGAAGGTGCCACAAGGAGCGGTCTGGTTTTGAGGGGGCCTGGACTAGAAACCCTTTGGTCTTTGACAACTCTTACTTCAAGGAACTTGTGAGTGGTGACAAGGAG
GGCCTTCTTCAGCTCCCAAGTGACAAAGCCCTGCTGAGCGACCCTGCCTTCCGCCCTCTTGTGGAGAAATATGCTGCG
GATGAGAAGGCTTTCTTTGATGACTACAAGGAGGCCCACCTC
AAGCTCTCTGAACTGGG
GTTCGCCGATGCATAA

Retrieve as FASTA