RedOxiBase: View Perox 204

Entry information : AtPrx38 (At4g08780 / PER38 / AtperoxP38)

Entry ID	204
Creation	2006-07-27 (Filippo Passardi)
Last sequence changes	2015-06-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2015-11-09 (Achraf Jemmat)

Peroxidase information: AtPrx38 (At4g08780 / PER38 / AtperoxP38)

Name (synonym)

AtPrx38 (At4g08780 / PER38 / AtperoxP38)

Class

Class III peroxidase [Orthogroup: Prx040]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtPrx38 start..stop	S start..stop
AlyPrx38-1	667	0	1..346	1..346
AhalPrx37	664	0	1..346	1..346
AhalPrx27	655	0	1..346	1..346
AtPrx37	645	0	1..346	1..346

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	5604153..5604359	207	N° 2	5607210..5607401	192	N° 3	5607481..5607649	169	N° 4	5607730..5608202	473
join(5604153..5604359,5607210..5607401,5607481..5607649,5607730..5608202)

Literature and cross-references AtPrx38 (At4g08780 / PER38 / AtperoxP38)

Protein ref.	UniProtKB: Q9LDA4
DNA ref.	Phytozome 12: Chr4 (5604153..5608202)
mRNA ref.	GenBank: NM_116948
Cluster/Prediction ref.	Phytozome Gene 12: 19645617
Omic ref.	AtProteome: At4g08780 ATTED-II: At4g08780 e-FP Browser: At4g08780 ePlant: At4g08780 Genevestigator: At4g08780 TAIR: At4g08780

Protein sequence: AtPrx38 (At4g08780 / PER38 / AtperoxP38)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	346 (324)
PWM (Da):	37930.29 (35528.9)
PI (pH):	7.72 (7.24)	Peptide Signal:	cut: 23 range:23-346

Sequence 507
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MHSSLIKLGFLLLLLQVSLSHAQLSPSFYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAIEKACPRTVSCADMLAIAAKESIVLAGGPSWMVPNGRRDSLRGFMDLANDNLPGPSSTLKQLKDRFKNVGLDRSSDLVALSGGHTFGKSQCQFIMDRLYNFGETGLPDPTLDKSYLATLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKSKIMDVVDDALEFASFM

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 4, 3 introns) and 3 ESTs.

Promoter►
Send to BLAST
Send to cis Analysis

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ACAAGAAACT TTCACTACAA AAACATTATT CGTAAACTAA AGAGAAGAAA AAATAACATT TTTTCTTTGT TTTGGTAAAT GATTTATGTT AATAGAGTGT TTTCTGGTAA TTCTAATTAA ACTAATTAGA ATAATCTAAC TTTTACCCTA TTACAGTGTG CATTTTTTTG TTCCGTTTTT TTTATCAACA ATATTTAACA TAGAATCCAA CTACAACGTA TATATAAACA ATAAATTTGG AATTCCATGA TATATATACC CTTGTATCGA AAAGAAAAAT CCATGAAAAC TATACTAACT ATTATCTTTA AAATACACAA TCTTTTTTCT TGCACTTTCA GAATAATACG CCAAACAGTT GAAAGACATT AACAAAACGT TAAATCTCAT ACATTTTTTC AATTTAAAAA TTTATACTAA CTATTAATCA AAAAATTGTG AGTGTCTACC AGCATTTCAG ACCTTGGCAT TATCACCAAT ACTAATAGTT CCGGAAGTTT TTCTATTTTC TTGGGTCTAT GTAAAGATAA ATTATTGACT TTGGAGAACA CTTTTTTTGG GTTCTTTAGT TCTAATTTTT CTTGGATCGT ACGGTATATT TAGAAATCAC GGAATGAAAA ACTTCACGAG AATATTAATC GAGATCCAAG GAACATTCTC CCATTAACGG AAAACGAAGC CAATGTTTAG ACGTTAGCTC AATTGGAGCC AATGGCAGTT AAATCGGTTA ATATAAATCC TTCAGGATAT CATTGTTTCA TTGATTACTC CTGTAAAGAA ACTGATAAGT TTTTGCGCAT GGGATGGTTT TATACATTAT CAAATACGGA CATCCAACCA TGGGTGTTGC CAACCTACGT AGAAGTTTCA CATGTCTACA CACAAAAGTG GAAGCATTTG TCTAGGTAAT AAGATGTATG ATTGGCCAAA ACAAACGAAA AATGACGTTC TATACAAATT ACTCAGATCT AGTGAAAATG GTAACTAATA AAATTGTCGA TAAAAAAAAA ACAAAAAATA AAAACAAAGA AAAAAAAACA AAAACAAAAA ATTATACTAA AATTAAATTT ACCCACATAT ACCATTAATT AAAGCATTAC CTCGAATAGT AATAACGCCA AAAACAAAGG AATGTCGTCT CCTCACACTC TTTCGCTCCT CATTCCTTCT CTAAACATCT CCTATTCTCT CTTGACACCG TTGATTCCAA ATCGAGTAGC TAGAATATAG TCACCGCTTT TTATGTGTGT TTGTCACTTT CAAACATCAA GTTCGTCATC ACGGTATAAT TATACCAAAA CTATAAGCTT TCGTTACGTT ACTATACATA CCCGAACTCA AGTTTTTTCA TGTTCATACC CAAAATTGTA GATAATGTCG AAAATCTACA TTGATCGATC GTCAAATCAT TATCAAACCA TAAACAATGC CAAGTCATCT CCTGAGTCAC ATATATATGA TGCGTCTAGC TAGAGCATTG TTGTTACTAT GTTGCATAAA AACGGTCGGT TCAATTCTTC ATTCTTCTCT TCTACTAATG TTGTTTTGCT CAATTTCTTA CTCTAAACAC CTAGTTTTAC AAAAGAGGTC TAGTAACCTG TTAACACTAA AAAAAAACAT CCACAACTCT ATGTTTTTCT TCTCAAGTCA AACACTCTTG AACATTGTTA CTACTATGCT TCTTATTAGA CATTCCAAGA AAAATTTAAT TATCACTTGT ATAGCATAGG AATCAAATTG AGCATTGACA ATTAAAGTGT TGTAGACTTT AAAACCTAGT AGCCGAAAGA AAAAAAACAG ATGCTTTAAA CCACTTTGTA CAATTCCATA TGTAATAGAC TATTAACGTA TACACTACTT GAATAAAAAT ATCTCATAAT CCACAAAAGT AAAAGCCGCC AAGCTAGATT ATTCTGCCTA
TATAAGGAAT CGTTACGAAG AAACCTAAAT TCACTCATAT CTAACCATAA CCAAAAACAT TCTCTTAGAG AGCAAAGAAA

Retrieve as FASTA

Terminator +►
Send to BLAST
Send to cis Analysis

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GGAAATGTTT TTCTCTAACA ATAAATAAAT CATCAATGTT GTCAAGATGT TTCTTTAACG TTACTTATTT ATAATCTATT AAATGTTGTG TACAAATACT ACCAAAGAAC AACGTGCAAC TAAAAGTATA GGTGACAAGC TACTGTCTAA AGCTCAATGA TCATCTACAC CTAACCAATG ATGAAACAAT ACACCGAAGC AAACAGAGAA TGTAGAATTC AAATAAGGTG ATATGTTTCT ACGCTTGTAA CTATATTGGC AACATTTCAC AACACCAATG GTTTCATCAG AGATCTATTG AGACTCGTTG CTGCAAAACA AAGAAGATGG ATATATAAGA CTTCTTTTGA TTAACCGTTT GGTCCAACAG AAAAACAAGT TTGTGAAGTC TGTATTTTTA CCTTATCTAT TGGCATTTTT GTTCTCACTG AGTCAATCAA TGAAAAATCA ATATCTGCCA CGACAATGCC GGTCGAAACA CGATCTGCAA CAGCAACAGA ATCAATCATT TCATTTTGGT AAGAAGAGAC TTTTGTGTTT CATAGATCAA GATATAGATG ATGCCTTTGA TCATTTCAGG ATTCTCACCA GGTAACCTTC CAACTACAGT TCCCCACGGA TCAATGATCA GTGTGTCACC ATAACTTTCT CTTTTCTCAT TATGCTTTCC TGCTTGAGCA GCAGCTATGA CCTGACGATA AACCAAGCAC GGAAATCGAA CAGAGACTGT TAATCACAAA TGCAATGAGA AGTTAAAGAG GGAGATAAGT GTATAATGAC ATACATAACA TTGAGTTTCA ATTGCTCGGG CTCGAAGAAG AATCTCCCAG TGTGCCTCCC CAGTGACCTT GGTGAAAGCT GATGGTACTA GTAAAACCTG CAGAGCATTA AGACAGACAT TTTATACTCA AGTCTGTGCT TTTTTTCTGT AGGAACTCAG TTTTATCACA TTTTTGTTTC
GTCGTTTTTT CGCAGAGTTT CGAAGCGCAC GTAATTTAGA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTCCTTCTTCAGGTCTCATTGTCTCATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGATATTGTA
ACCAATACCATTGTCAATGCGCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGTCTTCATTTCCACGACTGCTTTGTTAATGTAAGATACCACCAGATTCGATATATTCATGTA
TATATTAAGTACTCTTTTGGTTCTTTGATGGTTTTATCCTAAAAAGTGAGAATGCTTTACGGATATAATCATATATATGAAAGTTGGCCAACTCTCTCCATTTGGGTGACACATCATCAC
ACAAGAAAATGACATGTGTCATTTTACATTAATTATAAAAAAAAAATTAGTACAACTAATTGAGGAAAAATCAAAAGTCTTTTGTTGTGTAAATTCTCTATTAATCTCACTCTTAAATGA
ATTTTCTAAAAACACTCAATAAATAAAAAATCATAACAATGTATAAAGTACTACTTTCATTCTATTCTAATTATTTTTTTAATTTTTTTTATCAATAGTTATTAATCCATAATGGCTAAA
ATTTACTTATGTTGTAGTTTAGATGTTTGCTACCTAACCTCATATTAATTTAGTAATTTTAGTTGGATATTTTCTTATTATTACGTTATGTGATTATGATTTATCATATGACCTTCTTTC
TGTTTATTTTTGTGCGTTCTAATAACTTCGTAACATTGATATACAATTTTTTCACGTAGTGGTCATCTGAGACATTAGACATACCCACACAAAAACACGAGACTCTATATGGCTATATGA
AAGGGAAGAGAATTAAAGTGTTGACTTAATTTACTAGCATATCATGATGTGGTTGGTGTAGTAGATGACAAAAGAATATATGGAATAAAAAATTGTTTGTTACAATTAAGTTAGGCAAGT
TTCAAAATACATAAGTAATATAACTACATATTAATATATCATATAATGTTGTTGTGTGTGTTCATGATAGTGAAATATTTGAATAATAGGTATATAAATATTTATATTATAATAAAATTG
ATATTTCGAATTATAGATAAATTTAATCATAGAAAATTATAACTATATAAAATATATATGAATTTATTAATTACACATTAACATACACACACAAATGAACATCAAAATCAACAAAAGACT
ATAATCATATATTCCGACAATTTTAAAAACAAAAACCCATGCGTAGCATGAGTGTTCATTTAGAATAACGAATTAACTAATAATAACAAATACGCAGGTAATATTATAAACATTGTATAT
ATAAAGATCATAAGTTTATATATTATCTATATGTGGTGTAATCATATGTATAAAAGTTGGTCAACTCTCTTCATATGAATGACACATCATCACTTAGTTTTTGCCTAATGTCCACTTAAT
AATTAATGTAAGTTAATGGTTTATGGTGATTTATTATTTAATTGTATATATTATAAAATTTTACATAATTAATTGTATCAAGAATAATTTTCTTTTATTTTGTATATCTTTTTCTTAAAT
TAAATTATTTAATTGATTTTCTCATACTCTTGGATATTTTTCCCTAATTTTTATAATTTTAAGTCAAAATATGATTAAATAATTGTATAGTGGATTAGCTCATAGTTTTTGTAGTTTGTT
CTTTTTCTATATAATATATGAAAAATGGTGAGAAGTACTTGAGAATTCTATCATCAAATTCTTGGACTCAAATCCTCTACCATTTTGTCTTATTGTTTTGGTTTAAGGTTAACACAGATG
AAAAAAAATTCTGAAAATAATGTTTACTGAGAAAAGATTTTGTAAGGAATCTAAATGCAAAATGCAAAAACAAATGTTGATTTATGGAGCTTAGTATCAAATAGGATTTTTGTCTTCTTG
CCTATTAAAAAACTAACCTAAAATCTTACATTTAAATACTTTTAAATTACGAAATATAAAGTGAAAGCCCGCACGTATTGCGGGTACTCATCTAGTTAACTTGAAATAAGGATAGACATT
TCGGTTAGTTCATTTAATGTCTAATTAATTAATTAACTTGAAATAAAGATAGATTAATTATATAATAAAAAAACTGAATATTGATACAGTTATTATCGTCACAATAAAACAATATTCAGT
CACAATAATTTTTTTATGACGAAAGTGAAACGTATTTTAGAATGTCACAATAAAATCGTCACAAATCCATAAAGGTCTTAAAAAGATCACAAGACGATTAACAACAGTAACAATTCGTCA
TTGATTGTGACGACGTTAATATAGTCGAATAAACAGACACAGTTCGTGACGCACGATACTGTCATAATTTTTGTCACAATTTTTTCGTAAAAATATTTGATTTCTTTTTGTCTTAATAAG
ATACTTAAAACTATAGATTTCTTTTGATTGTTTGGTTTTGAAATTTTGGCTTTCTTTTGGTTGATTAAAACAATAGGAAAAAAAAAACAGAAGTTAAATAAAAATTCAAAGTAACAAAAA
AAGTTATTTCTACATCTGAAAATTTATGCGTTTTTGGATAAATTATCTTTTTGGAAGTTTGATTTTGTTTGTTTTGACTATTTTTTGGTTCAATTTGGAGTGGCTATTATTTTCTATGGA
CCAACCAAACCACTTCTTACGGAAATTGAGATGACTATTTTATTATTACAACTCTATATAGATATTCCAGTGCTGTCTTATCTCAAGTGTCAGATTTTGTCGTCAAAGTAAAGTCAAAGA
TAAAATTCTCTTCGATTATTAGATAATAATTAGTGAACTCGTATCACAAAAAACAAATAGTGAACTCATATTTTTCTTTTTTGGATTATTAGATTACATAGATGTCTTTGATCAACAAAA
AAAAAATTACGTAGATGTTGTGGCGTAGTATAGTAGCGCATTAATAACTAGATTTACTATTTTTCTTGCGGTAAAAAGAGAAAAACAAATCAGTAGATGCAGGTAAAATATATCTATGTG
GAAGTATTAACTTGATCTAACACTAATTGACAATAAAAATATTTTGTTTGGATAAAGGGATGTGATGCATCGATATTGTTAGACAACACAACATCGTTTAGGACGGAGAAAGATGCGTTT
GGGAACGCTAATTCAGCTCGAGGTTTCGATGTAATCGACAAAATGAAGGCTGCCATCGAGAAAGCATGTCCTAGAACCGTTTCATGTGCTGATATGCTCGCCATCGCAGCTAAAGAATCT
ATCGTTTTGGTATGCATCTTCTACTATGCTATCCAAATGGTTTTTGTAGACCATTTTGTTAATGTTTAACCAAATATGTTTACTTTAGGCGGGAGGTCCTTCATGGATGGTTCCAAATGG
AAGAAGAGACAGCTTAAGAGGTTTTATGGATCTTGCTAATGATAACCTTCCAGGTCCATCTTCTACACTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGACCGTTCTTCTGA
TCTAGTTGCTCTTTCCGGTATGTTATTATCTCATTTGAAACATTTTCATCTTTATAGTTGTAATCACTAATAACTCTATATGACTATATTGGTTTAGGTGGTCACACTTTTGGCAAAAGC
CAATGTCAGTTCATAATGGATCGTCTTTACAACTTCGGTGAAACCGGTTTACCCGACCCAACCCTTGATAAATCTTACCTAGCCACACTAAGAAAACAATGTCCACGTAATGGAAACCAG
AGTGTCTTGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCAAGGAGAACAAAGGACTTATCCAAAGTGACCAAGAGTTGTTCTCTAGCCCTGAT
GCTGCAGACACTCTCCCTTTAGTTCGAGCATACGCTGATGGTCAAGGGACATTTTTCGATGCGTTCGTGAAAGCAATAATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGA
GAAATAAGATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGATGATGCTCTTGAATTTGCCAGCTTTATGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA