Entry information : PtaPrx40(PTA00024898)
Entry ID 2100
Creation 2007-09-03 (Christophe Dunand)
Last sequence changes 2007-09-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2021-01-08 (Christophe Dunand)
Peroxidase information: PtaPrx40(PTA00024898)
Name PtaPrx40(PTA00024898)
Class Class III peroxidase    [Orthogroup: Prx041]
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pinus
Organism Pinus taeda (loblolly pine)    [TaxId: 3352 ]
Cellular localisation N/D
Tissue type Xylem
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtaPrx40
start..stop
S start..stop
PtaPrx74 586 0 1..325 1..325
PabPrx188 551 0 1..326 1..326
PabPrx52 548 0 4..320 1..318
PgPrx32 538 0 7..320 1..314
Literature and cross-references PtaPrx40(PTA00024898)
Literature Sederoff,R., Molecular Basis of Wood Formation in the Pine Megagenome, unpublished
EST ref. GenBank:   DR020886 [5' end]   DR020955.1 [5' end]
Cluster/Prediction ref. UniGene:   Pta.431   Pta.34260 [5' end]
Protein sequence: PtaPrx40(PTA00024898)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   336 (310)
PWM (Da):   %s   36723.61 (33941.1)  
PI (pH):   %s   8.55 (8.21) Peptide Signal:   %s   cut: 27 range:27-336
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASIAAMRIA ITRVWCVVLF VTCVYGQLNP HFYDKTCPGA LSIVNSTVVQ AISEERRIGA SLLRLHFHDC FVNGCDGSVL LDDTSSFTGE KTAVPNNNSA RGFEVVDKIK KKLEQACSGV  VSCADILAIA ARDSVVTLGG PTWTVMLGRR DSRTASRSDA NNNIPPPTSD LAKLISKFRA QGLSKREMVA LSGAHTIGKA RCVNFRGHIY NDSNIDKAYA KSLQDRCPKS GDDNKLSPLD 
YKTPTKFENN YYKNLVAEKG LLHSDQELFN GVSTDSLVTE YSKNVELFER DFTAAIIKMG NITPLTGSQG EIRENCRKRN SDSAIFLSST HLIHNE 

Retrieve as FASTA  
Remarks Complete sequence from genomic (incorrect prediction, contains two partial ORFs) and 8 + 15 ESTs (two unigenes),
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCTA TCGCTGCAAT GAGGATCGCT ATTACACGCG TGTGGTGTGT TGTTTTATTC GTAACTTGTG TTTATGGGCA GCTTAACCCA CACTTTTACG ATAAAACTTG TCCTGGGGCG  TTATCCATAG TCAATTCTAC TGTAGTTCAA GCAATCTCGG AGGAACGTCG AATTGGAGCA TCGTTGCTTC GCCTTCATTT TCACGACTGT TTCGTTAATG TATTTATAAT TACGTCGCAC  TTCTACCCTC TTATATACAT GGCATTGCGT TTCCGGAATC GAATTACAGC ATAAAAGTTA TATGTTATTC TTATTACTAA ATTTAAGTCG TCTTCTCCTC TTGCAGGGTT GTGATGGGTC  TGTTCTTCTG GACGATACCT CGAGTTTTAC AGGCGAAAAG ACAGCAGTTC CCAATAATAA TTCCGCCAGA GGTTTTGAGG TCGTTGATAA AATAAAGAAG AAGCTGGAGC AGGCTTGCAG  CGGTGTCGTA TCATGTGCTG ACATTTTGGC AATTGCTGCT CGCGATTCTG TTGTAACGGT AAAATTCACA ACGCACAGAT GTTTCTTTTT CGGTTTCACC ATTCCAATAG AAATTTTGTG  AGCATATAAG TTTAGTTATA AGTTTTGGTT TCTTCTGCCC ACTTATCTTT CTCTCGAAGC AATGTTTCTA TTATCTTGCT AAGTTTCTAT TAACATTCGA CCATTTTGCC AGTTGGGAGG  TCCTACATGG ACAGTGATGC TTGGAAGAAG AGATTCCAGG ACTGCAAGTC GAAGTGATGC CAACAACAAT ATTCCCCCTC CCACTTCTGA CCTTGCCAAG CTCATCTCCA AATTTCGAGC  TCAGGGACTT TCTAAACGGG AAATGGTTGC ACTTTCAGGT AACCAAGAAC ACTGCACGCC ACTCTAACCT CATTCTAATT GTAACTTGGC TTCTAAACCA GTTTTCTTGA TATTTTAGGT  GCTCACACCA TTGGTAAAGC GCGTTGCGTG AACTTCAGGG GTCACATATA CAATGATTCA AACATAGACA AAGCGTACGC CAAATCTTTA CAAGACCGCT GCCCCAAGAG TGGAGACGAC  AACAAGTTGT CGCCACTTGA TTACAAAACG CCAACAAAGT TTGAAAACAA TTACTACAAA AATTTGGTAG CAGAGAAAGG ACTTTTGCAC TCCGATCAAG AGCTTTTCAA TGGAGTGTCT  ACTGATTCTC TGGTTACTGA GTACAGCAAA AACGTGGAAC TTTTCGAGAG AGACTTCACT GCTGCAATTA TCAAGATGGG AAATATCACG CCTCTAACTG GTTCCCAAGG AGAGATCCGG 
GAGAACTGCA GAAAGCGTAA CTCAGATAGT GCCATCTTCC TTTCCAGCAC GCATCTGATA CACAATGAAT AA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCTA TCGCTGCAAT GAGGATCGCT ATTACACGCG TGTGGTGTGT TGTTTTATTC GTAACTTGTG TTTATGGGCA GCTTAACCCA CACTTTTACG ATAAAACTTG TCCTGGGGCG  TTATCCATAG TCAATTCTAC TGTAGTTCAA GCAATCTCGG AGGAACGTCG AATTGGAGCA TCGTTGCTTC GCCTTCATTT TCACGACTGT TTCGTTAATG GTTGTGATGG GTCTGTTCTT  CTGGACGATA CCTCGAGTTT TACAGGCGAA AAGACAGCAG TTCCCAATAA TAATTCCGCC AGAGGTTTTG AGGTCGTTGA TAAAATAAAG AAGAAGCTGG AGCAGGCTTG CAGCGGTGTC  GTATCATGTG CTGACATTTT GGCAATTGCT GCTCGCGATT CTGTTGTAAC GTTGGGAGGT CCTACATGGA CAGTGATGCT TGGAAGAAGA GATTCCAGGA CTGCAAGTCG AAGTGATGCC  AACAACAATA TTCCCCCTCC CACTTCTGAC CTTGCCAAGC TCATCTCCAA ATTTCGAGCT CAGGGACTTT CTAAACGGGA AATGGTTGCA CTTTCAGGTG CTCACACCAT TGGTAAAGCG  CGTTGCGTGA ACTTCAGGGG TCACATATAC AATGATTCAA ACATAGACAA AGCGTACGCC AAATCTTTAC AAGACCGCTG CCCCAAGAGT GGAGACGACA ACAAGTTGTC GCCACTTGAT  TACAAAACGC CAACAAAGTT TGAAAACAAT TACTACAAAA ATTTGGTAGC AGAGAAAGGA CTTTTGCACT CCGATCAAGA GCTTTTCAAT GGAGTGTCTA CTGATTCTCT GGTTACTGAG  TACAGCAAAA ACGTGGAACT TTTCGAGAGA GACTTCACTG CTGCAATTAT CAAGATGGGA AATATCACGC CTCTAACTGG TTCCCAAGGA GAGATCCGGG AGAACTGCAG AAAGCGTAAC 
TCAGATAGTG CCATCTTCCT TTCCAGCACG CATCTGATAC ACAATGAATA A 

Retrieve as FASTA