The peroxidases and oxidases database
Entry information : GmAPx04 (Glyma11g11460)
Entry ID 2229
Creation 2007-02-14 (Felipe Teixeira)
Last sequence changes 2007-02-14 (Felipe Teixeira)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmAPx04 (Glyma11g11460)
Name (synonym) GmAPx04 (Glyma11g11460)
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation Peroxisomal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx04
start..stop		 S start..stop
GmAPx03 541 0 1..287 1..287
VuAPx02 519 0 1..287 1..287
LjAPx02 511 0 1..287 1..287
MtAPx02 493 6e-179 1..287 1..287
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8170102..8170217 116 N° 2 8169814..8169938 125 N° 3 8169469..8169518 50 N° 4 8167893..8167958 66
N° 5 8167756..8167804 49 N° 6 8167531..8167613 83 N° 7 8167361..8167440 80 N° 8 8167135..8167237 103
N° 9 8166226..8166417 192  
complement(join(8166226..8166417,8167135..8167237,8167361..8167440,8167531..8167 613,8167756..8167804,8167893..8167958,8169469..8169518,8169814..8169938,8170102. .8170217))


exon

Literature and cross-references GmAPx04 (Glyma11g11460)
Literature Shoemaker,R., Keim,P., Vodkin,L., Erpelding,J., Coryell,V., Khanna ,A., Bolla,B., Marra,M., Hillier,L., Kucaba,T., Martin,J., Beck,C., Wylie,T., Underwood,K., Steptoe,M., Theising,B., Allen,M., Bowers ,Y., Person,B., Swaller,T., Gibbons,M., Pape,D., Harvey,N., Schurk ,R., Ritter,E., Kohn,S., Shin,T., Jackson,Y., Cardenas,M., McCann ,R., Waterston,R. and Wilson,R. Public Soybean EST Project
DNA ref. Phytozome 12:   Gm11 (8170217..8166226)
EST ref. GenBank:   BM188323.1 [5' end]   CD397720.1 [3' end]
Protein sequence: GmAPx04 (Glyma11g11460)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   287
PWM (Da):   %s   31571.37 Transmb domain:   %s   o258-280i
PI (pH):   %s   6.8
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALPVVVDAEYLKEVDKARRDLRALIANRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKKAIDFQEVKAKYPKITYADLFLAGVVAVEVTGGPTIDFVPGRRDSKVSPNEGRLPDAKKGVPHLRDIFYRMGLTDRDIVALSGGHTGRAHPERSGFDGPWTEDPLKFDNSYFVELLKEDSAGLLKLPTDKALLEDAEFRCYVELYADEDAFFRDYAESHKKLSELGFVPSSKPISIKEGTILAQGAVGVVVATAVVILSYLYEVRKRGK*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 23 ESTs. ESTs from GmAPx03 and GmAPx04 have been compile in the same Unigene Gma.6091.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTTGCCGGTAGTCGTCGATGCAGAGTACCTCAAGGAGGTCGACAAGGCTCGCCGCGATCTCCGCGCACTCATCGCTAACAGGAACTGCGCTCCTCTCATGCTCCGATTAGCGTAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAACGATTGATTTTAATACCTAGATTTCGCTTCGTACACGGTCAACGCTGCGATCGTGCAACTGTGTGT
TTCCCTTTTCTGTGTTTGAATTAGCTTGATTTGATGCAGCTGGCACGATGCCGGAACTTACGATGCTAAGACCAAGACCGGTGGACCTAACGGTTCGATCCGGAACGAGGAAGAGTATTC
TCACGGAGCCAATAATGGCTTGAAGAAAGCTATTGATTTCTGCCGTATGCTTTTTCTTCATTCCTTACTTTTTATCTTTTCCTAAAATTATTTCGTTTTCATTTTGCTAGCTAGCTAGGT
TAGGAATTGTAATGCTCCGTGCTTATCTATTTGCACATACTTTGTGTTATTTGAGTATTGAATTAACCATAATACATATAGGCTTGAATTTGGTTTGTGATTTGTCATGGTCACGCGGCC
TTGTGTTGAATTGAACTCGCTTAGGATGTTCTTACCAAAATTGGAACTATGTCGGTCTCCTTGTCTTTCTAAGAGTTGGCTGATTTTCTGATGTCGCAGAGGAAGTGAAGGCAAAATATC
CTAAAATTACATATGCAGATCTCTTCCAGGTGATCATTTGTTTTCATTTAGTTGCTATAAAAGTCTGTAGTGAATCTGATAATTTTTTACTGAATTCATTAGGTAAAAATTATAGAATGG
GGTCAATGGACTTTCAAACTTGTCTGGGATTTGCATGATAATTAATTAAGGGTTCCATTTTCTGCCACTATCAGTTCAAATTACTCTTTTTGTACACTGTTTTTTACTCAAATCTCATGG
ATGCTGCTGAGGCTTTGGTTTTCCTATAGTGTTAGGTGGGATTAGTTTATGACTCTTGTTTCTATTTTGTTGCCTGATCATGATTGAATTTCAGTATGAGGTGGATGGATGAATCTTAAG
GTTACAGACTTAACATGCCAGTGATGTAGTGCCTTGTTACACTTAAGACTCATCCTCTTATAATGTTTGACAACTCTGATTACTTATGGTTTCAAATTGTGGAACACATCCCATGATGCG
GCCAGGATATTGTGGTTGGGTTCACAACCACATCACACCTTTTGATGTGTTTGAAAATCACTAAAAGATCTGCAACGTTCCACCAAAACAAATGCATCACACAGCAATGGGAATCAAAGT
TCTCAAACAAATTGTTCTTCACTCTTTCTATTTCTTTACTTAGTAGATTTAAAGTGAATTTCAAAGGGTTGGGGAGATTTTAGGATGTTGGCAAGTTGGTGAATGAAAGGTGGGATTTGG
GAGGGAGGAGCAATAGATGTGGGATTTTGAATGAGTCATGATAAGTTACATTCAGTGCAAACATAAAATAATTTTATGCTGCAATGGCCACAATATTGCATCACAATAGCTAAAATGCCT
GCAATTGCAGTGGCCACAACCATGTCTGCATCCACAACCACTACCACAATTTAAAACCAAAGACCACAATTGCAAGGGGATTGACAAACATTGCCCAGTTAATCAAGAATTCTTGATAGC
TATATCTTTTTTGTATTAGGAGCAGTAGTACAGCTAGATGTTGCTAGTTAAGAAGTGTACAGGAGTACAATTGAAGCTCAAGCTCCTGTATTAGTTAATGGAATGAGTTTCAAGTTTTAA
TAGCTTAAGCATTTACCTGGTTGTGGTCCAATTCTTTTGTGGCAAGTTTTTGACATGCATATAGTTAACGTTAGTGCCTAAGATTTCTACAATAAAGGTGAATATCATTTGATTTTCTTA
TACACTAATGTACTAGTGTCAAAGGTTAGAAAATATCAGCAATTTGATATTCTGAAAATCAAAATTTCCCTTAAGATTACCAAAATTATTTATATCAGAATCAAGCAGTTACTGGATTTT
TGTGTATATGACATACAAGCCATTTAAATCCAATGAGTGCATGAGTCCAGATTCTGTTGAAACAGAGAGGGAGGAGATTATCACTCATTGATAGGGTTGATAGGGCATAGCTTGTATAAA
ACAAGATTCATTTATAAGTAGAAAAAAGATTTAAACTAACTACCATATAGATTATACAAATCTGATTAAAAAATCATTTCTTTCTCCCTGTGCTTCCAGCTTGCGGGTGTTGTTGCAGTT
GAGGTTACTGGGGGTCCAACAATTGATTTCGTTCCTGGTAGAAGAGTATGTTGTGCCATGCCTTTAGTCAGAATATTAATTATTATGAAATCACCAAATTGTGTTTTGTTCATGTAATTT
TCTATTCTTGTAGGATTCAAAAGTATCTCCTAATGAAGGGCGGCTTCCTGATGCTAAAAAAGGTGTGTTTTGAAATTTGTCAGTGATAATACTATTCTCTTCACCTGGACTGTGAATGAT
GTTCTATTTTTTGTATTCCCTTCACAATTGACGAGGTTAAGAATGCAGTATGAAAGCATAAAAATATGTCAATGCTGTTGTTAGGTGTTCCACATCTCCGTGATATCTTTTATCGAATGG
GCTTGACTGACCGAGATATTGTTGCACTATCTGGAGGACATACACTGGTAATTCTTCTTTTGTTTAATATCTTTTTATTATTTGCTGTGATTATGACTAGATTATTCTTATCTTACTTTC
TGTGGTGATCTTATAAGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACGGAGGACCCTCTGAAGTTTGATAACTCATACTTTGTGTAAGACTTGTGTTGTGTGCAAT
ACTATAGAGTTTCACTTTGTAGAGCTTCACTTTAGCCTCGCAATGCAATATTGGAAGAGTTTGATTTTTATCTACATCTAAATATCATTGTTAACATCAGGGAACTTTTGAAAGAAGATT
CTGCTGGGCTGCTTAAACTTCCAACAGACAAGGCTTTATTGGAGGATGCTGAATTTCGCTGTTATGTTGAGCTATATGCAAAGGTAATTGAGATTAATTCAAATAACCACCGTTTTGAAA
TTTGTTTGATGTTGTGTCCAAATTACCAATTATTGTTTCTCAATAGCATTTCATGTGAATATCTGTTTACTATAAACACCATGAAGCTTGTAATCTTATTGCATTAATTATTAGATCAAT
CTTTTGGCCTGAGGTACCCACCAGGGTTGGCTTAATAGTGAGAGATTTGGGTAGTATGCATAAAGTTTTAGGTTCTATCCTTATCGCCACCATTATACAGTGTACACCAAAAAAAAATTC
TTTTGGCCCAAGCTCATTCAGTAGCAGTTGAGATTAGTAGGATCCTTCTTCCCCATGTGCGTTGTGCTTTGGAATTTACTATGCTATCTTGACACTTCATTAGTTCAAACAAACTGGCCC
ATTGACCTTTTCACCATTGGCTGGTCAGGTATTAATAAAATTACATACTTTGCCAACAATTGACTAAACGTTGGTCTTGTTTTCCTTCTTTAGACTAATGAAACTAAAGTTTACATTAAA
CTAAATAACATGCTTGATAGTGTTAGCACTTGTATGTAGAGTTGTAGAATAACTTACCGAAGTTTCTGTTTTGCTCTAAACCCATTAAAGAAAATTAAGAGCATACTATTTTCAGCAATG
TTCTGGCTGCTGTTAATGCATCATTGATTTGTGTGAATCTGTCTGCTGTCTCCTATTTTAAAACTCTGTCACTCTGGCAGGATGAGGATGCATTTTTTCGAGATTATGCTGAATCACATA
AGAAACTTTCAGAGCTAGGCTTTGTGCCAAGTTCAAAGCCGATTTCTATTAAGGAAGGGACCATACTGGCACAAGGTGCTGTAGGAGTTGTAGTTGCTACCGCAGTGGTGATCCTCAGTT
ACTTGTATGAAGTTCGCAAAAGAGGGAAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTTGCCGGTAGTCGTCGATGCAGAGTACCTCAAGGAGGTCGACAAGGCTCGCCGCGATCTCCGCGCACTCATCGCTAACAGGAACTGCGCTCCTCTCATGCTCCGATTAGCCTGG
CACGATGCCGGAACTTACGATGCTAAGACCAAGACCGGTGGACCTAACGGTTCGATCCGGAACGAGGAAGAGTATTCTCACGGAGCCAATAATGGCTTGAAGAAAGCTATTGATTTCTGC
CAGGAAGTGAAGGCAAAATATCCTAAAATTACATATGCAGATCTCTTCCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACTGGGGGTCCAACAATTGATTTCGTTCCTGGTAGAAGAGAT
TCAAAAGTATCTCCTAATGAAGGGCGGCTTCCTGATGCTAAAAAAGGTGTTCCACATCTCCGTGATATCTTTTATCGAATGGGCTTGACTGACCGAGATATTGTTGCACTATCTGGAGGA
CATACACTGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACGGAGGACCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTTTTGAAAGAAGATTCTGCTGGGCTG
CTTAAACTTCCAACAGACAAGGCTTTATTGGAGGATGCTGAATTTCGCTGTTATGTTGAGCTATATGCAAAGGATGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTT
TCAGAGCTAGGCTTTGTGCCAAGTTCAAAGCCGATTTCTATTAAGGAAGGGACCATACTGGCACAAGGTGCTGTAGGAGTTGTAGTTGCTACCGCAGTGGTGATCCTCAGTTACTTGTAT
GAAGTTCGCAAAAGAGGGAAGTAA

Retrieve as FASTA