Entry information : GmAPx05 (Glyma01g36940)
Entry ID 2230
Creation 2007-02-14 (Felipe Teixeira)
Last sequence changes 2011-05-10 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-12-13 (Qiang Li)
Peroxidase information: GmAPx05 (Glyma01g36940)
Name (synonym) GmAPx05 (Glyma01g36940)
Class Ascorbate peroxidase     [Orthogroup: APx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation Peroxisomal
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx05
start..stop
S start..stop
GmAPx06 336 9.44e-117 1..296 1..280
MtAPx05 333 1.08e-115 1..295 1..278
GmAPx10 312 7.81e-108 1..299 1..254
MeAPx09 311 8.35e-107 1..244 1..244
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2230' 'join(49334791..49334903,49335821..49335945,49336022..49336071,49336197..49336262,49336376..49336424,49336688..49336773,49336870..49336949,49337057..49337153,49338310..49338546)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49334791..49334903 111 N° 2 49335821..49335945 123 N° 3 49336022..49336071 48 N° 4 49336197..49336262 64
N° 5 49336376..49336424 47 N° 6 49336688..49336773 84 N° 7 49336870..49336949 78 N° 8 49337057..49337153 95
N° 9 49338310..49338546 235  
join(49334791..49334903,49335821..49335945,49336022..49336071,49336197..49336262 ,49336376..49336424,49336688..49336773,49336870..49336949,49337057..49337153,493 38310..49338546)


exon

Literature and cross-references GmAPx05 (Glyma01g36940)
Literature Shoemaker,R., Keim,P., Vodkin,L., Erpelding,J., Coryell,V., Khanna ,A., Bolla,B., Marra,M., Hillier,L., Kucaba,T., Martin,J., Beck,C., Wylie,T., Underwood,K., Steptoe,M., Theising,B., Allen,M., Bowers ,Y., Person,B., Swaller,T., Gibbons,M., Pape,D., Harvey,N., Schurk ,R., Ritter,E., Kohn,S., Shin,T., Jackson,Y., Cardenas,M., McCann ,R., Waterston,R. and Wilson,R. Public Soybean EST Project.
DNA ref. Phytozome 12:   Gm01 (49334791..49338546)
EST ref. GenBank:   AW309914
Cluster/Prediction ref. UniGene:   Gma.4678
Protein sequence: GmAPx05 (Glyma01g36940)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   300
PWM (Da):   %s   33662.54 Transmb domain:   %s   o274-291i
PI (pH):   %s   9.15
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAEPVVDDEYLKEIDKARRELRAFITSNQCAPLMLRLAWNDAATYDARNRAGGPNGSIRTDKELKHEANEGLLKATQLEHVKAKLKKVSYADLYLAGVVAIEVSGGPTIEFLPGRKDSME
SSAEGLLPDVKQ
GASIIRNIFSRMGISDDKHIVALCGGLTGETLKDRSDSKGQWPKDPLKFDNSYYKKILSKDLSSRLPIEDALLTDQSFRRHVEEYSDENSFFKEYAMSHKKLSELGYN
LKKQNQSKVPDEEQNQPKGPYEKLNQHRGLIGIGIVSVVTVILGYLLKRKKNQLKK*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 8 introns) and 4 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGAACCTGTTGTTGACGACGAATATCTCAAGGAAATAGACAAGGCTCGACGTGAACTTCGCGCTTTCATCACCAGCAACCAATGCGCTCCTCTCATGCTTCGATTAGCGCGTACA
TCACTCACTACTGCTTTCATTTCTTAACTTCTGAAGTAACATGTCAATAAGTCCTTTTAAAAGATTCCTTTCCTTTTTTCATCCATGACAATTTGAAATAATTTACATATCTGATTTAAC
TATTTAAATTCCTTTAATGTAACATATAGATTTTAAAAAAAAAAACAACTTAAAGAATGTAATAACTTATTTTTAAAAGACTTTTATAATCAATGTTTTGTAATTTAAATTTTAATGGAG
TTATATATTATAAGAATTTATAAGATTTGAAATGACTTACATTTACATGAGATTATAAAATTTGAAAGGGTTGATATTTTAACGAACATTTACAGTTAAAAGAAATGTCACACCTCTTTA
CACTTTCTTTCTTTTGTTATTTCCTAGTTACAAATTTCCCTTTTAAAGTACTAATACAGCACATGTAAAAATATATAGTAAAAAAATCTTTTACCTAATTACAATGAATGTATGCAGGAT
TGAAAGAAAGAAATGATCAAACATTTATACTGCCTTCACGAAAAGATAAAGAATTATGTGACAGGAGACAAAAAAAATAATTCTGGTAACGCAAAATAAAAAGTGTCCAGAAATATGGGT
GTAACTGGTGGATAAATATAATACTACTATTTATGTCTCTTACTCAAAAAACTCACCCAAAATCGACCGAAATCCACCATATATACAATATAATCCATCAATATTATAAGATTTTTTTTG
TAATTCACAAAAAGTCTGAATTAGACATCATCAAATTTGGACATCATATCTACAAAATTCAGATAATCATAACTGAATATGACAGTACATTTAAACATCTTAATTATATTTTAAAATCTC
AATGCAATGTGCATCTCCAAATAAATTCTCTATAGTCTCATAAAATTAATTAATTACATACTCTTTACACAGGTGGAACGATGCTGCCACCTACGATGCCAGAAACAGAGCAGGAGGCCC
CAACGGTTCTATCAGGACTGATAAAGAGTTGAAACACGAAGCAAACGAGGGATTGTTAAAAGCAACTCAATTATGTG
TGGTCAATTTCCTTTCACTCAACTCAAGCATGCTTATTTATTA
TTCTACCTCTTAATTCGTTTTTATTTCCCAAACAGAGCATGTGAAGGCCAAACTTAAAAAAGTTTCATACGCAGACCTTTACCAGAGGTTATTTTAATTAACATAGATATTGTGATAATT
AAACAACTTAATTAGACTAGAAAACAGGGGATCCAAAATCAATTTAGTTTGATGATTATATTAACTCTTATACGGTTGGATTTGCATTTCAGCTAGCTGGTGTTGTTGCAATAGAGGTCT
CTGGGGGTCCAACTATTGAATTTTTGCCTGGGAGAAAA
AAGTAATTAAGTATATCATGCGCAAGTTTTGTTTACCCCTCATAATGCACATGTTTCGATTTTCGATACTTTTAACTTCATA
TTTACTATGCTACATTACTACTTTCTTTACTAGGATTCAATGGAATCTTCAGCAGAAGGGCTTCTTCCAGATGTCAAACAAGAGGTATACTATATACTACTTTAATTTCTTTACTAGGAT
ACACGTGTTATATATCTTATGAATAATAAAGATTTAATTTGCCCTGCATTGTTTGGTTGTGTTCCTCTTTTTATTTGCAATTTGGATCTAGTTGTTAAAACATTCAACACACATGGTCTT
CTATTTAATCATTACGTATTCTGTCTGATGATATTCTAAGTTTTTGGAATCTTGACTTACAAGTTACAATTGTTATGAAAAAAAAAATTGATATGAAAAATTTTCAGGTGCATCGATTAT
AAGGAATATATTTTCTCGTATGGGTATAAGTGATGATAAACACATCGTTGCCCTATGTGGAGGCCTCACTTGG
GGGTAAGAACGATATATCCAAAAGTTCCTATGCATGAGTCCGTATTT
ATAGTTTTAACCATACATTCAATCTCATTATTATTCACGTCAATTGATAAGGGGGAAACACTTAAAGATCGTTCTGACTCTAAAGGTCAATGGCCAAAGGACCCTTTGAAGTTTGATAAC
TCCTATTATAA
AAGTAAGATGTCTAATTACATGATGACAATTGTTTTCTTTTTAAGATGTATACAAATTTCTGTCAAAAAAAGATGTATAAAAATTGAAATTTCTTATAACACTGAACAG

GAAAATATTGAGTAAGGATTTATCATCTAGGCTTCCCATAGAAGATGCTTTACTAACCGATCAAAGCTTCCGCCGCCATGTTGAAGAGTATTCAAAG
AGGTAAACGTGTAATGACCAAAG
AGTAGGGTTTTATTTTACTTTTTATTATTATTTAGACTTAAATATAATTTTGGTCTTTTTAATTCATTAGATCAATACTTTTGATTTTTCTATTTTAAGATAAAGACATTCAATTTATTT
ATTTTAAAAAAGTTATAATTGTTGTCCTTTATGTCAAAATAAAGACATTAGTTCTCCTATTTTACAAAATTTTTAATTTTAATCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGATCTAACATATTCATTTAAAGTATCATAAAAAATGATTTAATTAATTGTTATGTAAGAAATAAAATAAATAAAACATAAATAAAATTGAAGATTGAACCAAA
ATTATTAATTTTTTAAAAAATATGGGATCAAAATTTTGAATTTTAAAAAATAGAAGGATTAAATATCTCTATTTTAAAACATAAAGAATAAAATCAATTTTTTTCAAAACAGATAAACCA
AATATCTCTATTTTAAAATAGAAAACCAAAATTATACATTAAACAAAATATGACACTCAAATTACATTTATTTCAAATGAGTTGGAAACGACATATTACCGTCAACTATTTATAGTAATA
TAAAATTAGGTTCAAATTTAACATACTATATTTTTTTATAATAATATTTTTAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATAATAATATTTTTTCCAAGATTTTATTATACAAGGATAATTTCTCATAACTTTTAGAATAAAAAATTAATACAGTTAAAATTGATACATTTG
ATACAATTAGTAAATTACATTTATTAGATAAAATCAAACAGTTCACTCGAGTGAGCATTGAGTGAACTTTGAGGTATGTATTGATCTCGTGAACTCCCAAAACTCAATTTACTTCAATTT
TTCTCAATAAAAAAACAATTCAAATTTCGATCTCACCAAATCAGATTTAAAATATGAATTCAAATTCTTAACCATTTGAATTTTATTCAATGACTCTGATTTCTTAACCACATCAACCGT
GCTCATTTTTTTTAGTATATTATTGAGTCACAATCCTAATTTTCTGTTGTAATAGGATGAGAATAGTTTCTTCAAAGAATATGCAATGTCACATAAGAAACTCTCAGAACTAGGCTACAA
TCTCAAGAAGCAAAATCAATCAAAGGTACCAGATGAGGAGCAAAATCAGCCCAAGGGACCATATGAGAAGCTAAATCAGCACAGGGGACTTATAGGAATCGGTATAGTATCCGTGGTGAC
CGTGATATTAGGTTACTTACTCAAGAGGAAGAAAAACCAGTTGAAGAAATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGAACCTGTTGTTGACGACGAATATCTCAAGGAAATAGACAAGGCTCGACGTGAACTTCGCGCTTTCATCACCAGCAACCAATGCGCTCCTCTCATGCTTCGATTAGCGTGGAAC
GATGCTGCCACCTACGATGCCAGAAACAGAGCAGGAGGCCCCAACGGTTCTATCAGGACTGATAAAGAGTTGAAACACGAAGCAAACGAGGGATTGTTAAAAGCAACTCAATTATGTG
AG
CATGTGAAGGCCAAACTTAAAAAAGTTTCATACGCAGACCTTTACCAG
CTAGCTGGTGTTGTTGCAATAGAGGTCTCTGGGGGTCCAACTATTGAATTTTTGCCTGGGAGAAAAGATTCA
ATGGAATCTTCAGCAGAAGGGCTTCTTCCAGATGTCAAACAAG
GTGCATCGATTATAAGGAATATATTTTCTCGTATGGGTATAAGTGATGATAAACACATCGTTGCCCTATGTGGAGGC
CTCACTTGG
GGGGAAACACTTAAAGATCGTTCTGACTCTAAAGGTCAATGGCCAAAGGACCCTTTGAAGTTTGATAACTCCTATTATAAGAAAATATTGAGTAAGGATTTATCATCTAGG
CTTCCCATAGAAGATGCTTTACTAACCGATCAAAGCTTCCGCCGCCATGTTGAAGAGTATTCAAAG
GATGAGAATAGTTTCTTCAAAGAATATGCAATGTCACATAAGAAACTCTCAGAA
CTAGGCTACAATCTCAAGAAGCAAAATCAATCAAAGGTACCAGATGAGGAGCAAAATCAGCCCAAGGGACCATATGAGAAGCTAAATCAGCACAGGGGACTTATAGGAATCGGTATAGTA
TCCGTGGTGACCGTGATATTAGGTTACTTACTCAAGAGGAAGAAAAACCAGTTGAAGAAATGA

Retrieve as FASTA