Entry information : AtPrx64(At5g42180 / PER64 / AtperoxP64 / PRXR4 / ATP17a / AtP17 / Atprxr4ge)
| Entry ID | 230 |
|---|---|
| Creation | 2006-02-10 (Filippo Passardi) |
| Last sequence changes | 2016-12-08 (Christophe Dunand) |
| Sequence status | complete |
| Reviewer | Not yet reviewed |
| Last annotation changes | 2020-03-04 (Christophe Dunand) |
Peroxidase information: AtPrx64(At5g42180 / PER64 / AtperoxP64 / PRXR4 / ATP17a / AtP17 / Atprxr4ge)
| Name | AtPrx64(At5g42180 / PER64 / AtperoxP64 / PRXR4 / ATP17a / AtP17 / Atprxr4ge) | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Class | Class III peroxidase [Orthogroup: Prx015] | |||||||||||||||||||||||||
| Taxonomy | Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis | |||||||||||||||||||||||||
| Organism | Arabidopsis thaliana [TaxId: 3702 ] | |||||||||||||||||||||||||
| Cellular localisation | N/D |
|||||||||||||||||||||||||
| Tissue types | Callus Endoderm Flowers Green siliques Mixed tissues Roots Siliques Vascular tissue Xylem |
|||||||||||||||||||||||||
| Inducers | Dark growth Drought Lignification |
|||||||||||||||||||||||||
| Repressor | N/D |
|||||||||||||||||||||||||
| Best BLASTp hits |
|
|||||||||||||||||||||||||
| Gene structure Fichier |
Exons►
|
Literature and cross-references AtPrx64(At5g42180 / PER64 / AtperoxP64 / PRXR4 / ATP17a / AtP17 / Atprxr4ge)
| Literature | REFERENCE 1 Tokunaga N, Kaneta T, Sato S, Sato Y. Analysis of expression profiles of three peroxidase genes associated with lignification in Arabidopsis thaliana. Physiol Plant. 2009 Jun;136(2):237-49.
REFERENCE 2 Yi Chou, E., Schuetz, M., Hoffmann, N., Watanabe, Y., Sibout, R., Samuels, A. L. Distribution, Mobility and Anchoring of Lignin-Related Oxidative Enzymes in Arabidopsis Secondary Cell Walls. JExBot 2018 REFERENCE 3 Kamiya T, Borghi M, Wang P, Danku JM, Kalmbach L, Hosmani PS, Naseer S, Fujiwara T, Geldner N, Salt DE. The MYB36 transcription factor orchestrates Casparian strip formation. PNAS 2015 REFERENCE 4 Tokunaga N, Kaneta T, Sato S, Sato Y. Analysis of expression profiles of three peroxidase genes associated with lignification in Arabidopsis thaliana. Physiol Plant. 2009 Jun;136(2):237-49. |
|---|---|
| Protein ref. | UniProtKB: Q43872 |
| DNA ref. | Phytozome 12: Chr5 (16852702..16854021) |
| mRNA ref. | GenBank: NM_123583 |
| Cluster/Prediction ref. | Phytozome Gene 12: 19666549 UniGene: At.23304 |
| Omic ref. | AtProteome: At5g42180 ATTED-II: At5g42180 e-FP Browser: At5g42180 ePlant: At5g42180 Genevestigator: At5g42180 TAIR: At5g42180 |
Protein sequence: AtPrx64(At5g42180 / PER64 / AtperoxP64 / PRXR4 / ATP17a / AtP17 / Atprxr4ge)
| Sequence Properties first value : protein second value (mature protein) |
|
||||||||||||
| Sequence Send to BLAST Send to Peroxiscan |
|
||||||||||||
| Remarks | Complete sequence from genomic (3 introns), 10 cDNA and 41 EST mainly from siliques. | ||||||||||||
| Promoter► Send to BLAST Send to cis Analysis |
|||||||||||||
| Terminator +► Send to BLAST Send to cis Analysis |
|||||||||||||
| DNA ► Send to BLAST |
|||||||||||||
| CDS► Send to BLAST |
|||||||||||||
| cDNA► Send to BLAST |
|||||||||||||
