Entry information : PcLiP01_RP78 (LPOA / Ligninase H8 / PcLiPA_RP78)
| Entry ID | 2412 |
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| Creation | 2006-12-28 (Christophe Dunand) |
| Last sequence changes | 2012-03-29 (Christophe Dunand) |
| Sequence status | complete |
| Reviewer | Not yet reviewed |
| Last annotation changes | 2012-03-29 (Christophe Dunand) |
Peroxidase information: PcLiP01_RP78 (LPOA / Ligninase H8 / PcLiPA_RP78)
| Name (synonym) | PcLiP01_RP78 (LPOA / Ligninase H8 / PcLiPA_RP78) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Class | Lignin peroxidase [Orthogroup: LiP001] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Taxonomy | Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Organism | Phanerochaete chrysosporium [TaxId: 5306 ] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cellular localisation | N/D |
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| Tissue type | N/D |
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| Inducer | N/D |
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| Repressor | N/D |
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| Best BLASTp hits |
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| Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2412' 'join(373851..373911,373972..374125,374179..374235,374290..374504,374558..374599,374653..374731,374782..375205,375260..375324,375387..375408)' |
Exons►
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Literature and cross-references PcLiP01_RP78 (LPOA / Ligninase H8 / PcLiPA_RP78)
| Literature | Walther,I., Kalin,M., Reiser,J., Suter,F., Fritsche,B., Saloheimo,M., Leisola,M., Teeri,T., Knowles,J.K. and Fiechter,A. Molecular analysis of a Phanerochaete chrysosporium lignin peroxidase gene. Gene 70 (1), 127-137 (1988)
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| Protein ref. | UniProtKB: P06181 |
| DNA ref. | GenBank: M37701 JGI genome: scaffold_19 (373851..375408) |
| mRNA ref. | JGI transcript: 10957 |
Protein sequence: PcLiP01_RP78 (LPOA / Ligninase H8 / PcLiPA_RP78)
| Sequence Properties first value : protein second value (mature protein) |
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| Sequence Send to BLAST Send to Peroxiscan |
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| Remarks | Complete sequence from genomic (8 introns). Strain="BKM1767" and "RP78". Also referred to as peroxidase isozyme H8. Forms a cluster with LipB. Note that the accession Y00262 (the only SwissProt link to NCBI) gives a wrong sequence at the 3'end, that is why we prefer the accession AAA33740. Synonymous SwissProt accession: P31838 (named lpoB by the authors of the sequencing!!). Also note that depending on the NCBI accession (see SwissProt P06181/P38138), the sequence is not exactly the one entered here above, because of different sequencing groups. |
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| DNA ► Send to BLAST |
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| CDS► Send to BLAST |
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