Entry information : TvLiP12_PRL572 (LPGIV / LPG1 / Ligninase C)
Entry ID 2420
Creation 2006-09-01 (Christophe Dunand)
Last sequence changes 2011-10-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-10-05 (Christophe Dunand)
Peroxidase information: TvLiP12_PRL572 (LPGIV / LPG1 / Ligninase C)
Name (synonym) TvLiP12_PRL572 (LPGIV / LPG1 / Ligninase C)
Class Lignin peroxidase    [Orthogroup: LiP002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvLiP12_PRL572
start..stop
S start..stop
TvLiP12 754 0 1..372 1..372
TvLiP08 677 0 1..364 1..364
TvLiP04 627 0 1..364 1..364
TvLiP06 625 0 1..359 1..359
Literature and cross-references TvLiP12_PRL572 (LPGIV / LPG1 / Ligninase C)
Literature Jonsson L.J., Nyman P.O. Characterization of a lignin peroxidase gene from the white-rot fungus Trametes versicolor. Biochimie 74:177-182(1992).
Protein ref. UniProtKB:   P20013
DNA ref. GenBank:   M64993
Protein sequence: TvLiP12_PRL572 (LPGIV / LPG1 / Ligninase C)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   372 (351)
PWM (Da):   %s   39472.47 (37367.3)  
PI (pH):   %s   4.28 (4.24) Peptide Signal:   %s   cut: 22 range:22-372
Sequence
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Send to Peroxiscan
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MAFKSLLSFV SVIGALQGAN AALTRRVACP DGVNTATNAA CCQLFAVRED LQQNLFHGGL CTAEAHESLR LTFHDAIAIS PALEAQGIFG GGGADGSIAI FPEIETNFHP NIGLDEIIEL  QKPFIARHNI SVADFIQFAG AIGASNCAGA PQLAAFVGRK DATQPAPDGL VPEPFHTPDQ IFDRLADASQ GEFDPILTVW LLTAHTVAAA NDVDPTKSGL PFDSTPELWD TQFFLETQLR  GTSFPGSGGN QGEVESPLAG EMRLQSDHTI ARDSRTACEW QSFVDNQPKA QQMFQFVFHD LSIFGQDINT LVDCTEVVPI PADPQGHTHF PAGLSNADIE QACAETPFPT FPTDPGPKTA 
VAPVPKPPAA RK 

Retrieve as FASTA  
Remarks Complete sequence from Genomic DNA (6 introns). Strain="PRL572". Forms a cluster with TvLiP (LPGIV) and TvMnP02_PRL572 (MPGI).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTATAAAA GCAGGGCGAC ATTGGCGACA TTCTTCAGAG CACTCAAGCC TCAGTCCTCC TCAGTCCCAG TTCGACATGG CTTTCAAGTC TCTTCTTTCT TTTGTCTCGG TCATTGGAGC  GCTCCAGGGC GCGAACGGTG CGTAGGAGGT GGCGGGTATT CGCCGAGTCC CGACAGAGCA TCTTTGTGCA GCATACTGAC CCACATTTAT CTTTTAGCCG CGTTGACCCG CCGCGTCGCT  TGCCCCGACG GCGTGAACAC CGCTACCAAC GCGGCGTGCT GCCAACTCTT CGCTGTCCGC GAGGACCTCC AGCAGAACCT GTTCCACGGC GGTCTCTGCA CGGCTGAGGC GCACGAGTCT  CTCCGTCTGA CCTTCCACGA CGCCATCGCC ATCTCCCCCG CTCTCGAGGC CCAGGGCATC TTCGGGTACG CTGAATAGAT TTCTGCCCTT AGCTGAATGT ATTAACCGGG ATATGCTGTT  CAGTGGTGGT GGTGCCGACG GCTCCATCGC GATCTTCCCC GAGATCGAGA CAAACTTCCA CCCCAACATT GGTCTCGACG AAATCATCGA GCTCCAGAAG CCGTTCATCG CCCGTCACAA  CATCTCCGTT GCTGACTTGT GAGTACCTGA AGCGAAGCAA TAATCGACCT TGTACTGATA CGTCGGTGCA GCATTCAATT CGCTGGTGCC ATCGGTGCCT CGAACTGCGC GGGTGCTCCC  CAGCTCGCTG CCTTCGTCGG CCGCAAGGAC GCCACCCAGC CCGCCCCCGA CGGCCTCGTC CCCGAGCCGT TCCACACGCC CGACCAGATC TTCGACCGTC TCGCGGACGC GTCTCAGGGC  GAGTTCGACC CCATCCTGAC GGTCTGGCTC CTGACCGCGC ACACCGTTGC TGCCGCCAAC GACGTCGACC CCACCAAGTC CGGCCTGCCG TTCGACTCCA CCCCCGAGCT CTGGGACACG  CAGTTCTTCC TCGAGACCCA GCTCCGCGGC ACGAGCTTCC CCGGCTCCGG CGGCAACCAG GGCGAGGTCG AGTCTCCCCT TGCGGGCGAG ATGCGTCTCC AGTCCGACCA CACCATCGCT  CGCGACTCCC GCACGGCATG CGAGTGGCAG TCGTTCGTCG ACAACCAGCC GAAGGCTCAG CAGATGTTCC AGTTCGTGTT CCACGACCTT TCCATCTTCG GCCAGGACAT CAACACGCTC  GTCGACTGCA CTGAAGTCGT ACGTCGCACC ATTCTTCCGC ATTCGTGCCC CCCTGTAACA GCCACTAACT GCCACATGTA TAGGTCCCCA TCCCGGCTGA CCCTCAGGGC CACACGCACT  TCCCCGCTGG CCTGAGCAAC GCCGACATCG AGCAGGCTGT AAGCACAATC TAGTCCCTCG CCGACTATAC TCCACTGACC CATTTGCTCT ATAGTGTGCC GAGACCCCCT TCCCGACCTT  CCCCACCGAC CCCGGACCCA AGACCGCCGT CGCCCCCGTG TAAGTTCCCC AACCGATATT GCTTGTGTAC GTGACCTTAC GAGCCGTTCC AACAGCCCCA AGCCCCCTGC CGCCCGGAAG 
TAA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTTCA AGTCTCTTCT TTCTTTTGTC TCGGTCATTG GAGCGCTCCA GGGCGCGAAC GCCGCGTTGA CCCGCCGCGT CGCTTGCCCC GACGGCGTGA ACACCGCTAC CAACGCGGCG  TGCTGCCAAC TCTTCGCTGT CCGCGAGGAC CTCCAGCAGA ACCTGTTCCA CGGCGGTCTC TGCACGGCTG AGGCGCACGA GTCTCTCCGT CTGACCTTCC ACGACGCCAT CGCCATCTCC  CCCGCTCTCG AGGCCCAGGG CATCTTCGGT GGTGGTGGTG CCGACGGCTC CATCGCGATC TTCCCCGAGA TCGAGACAAA CTTCCACCCC AACATTGGTC TCGACGAAAT CATCGAGCTC  CAGAAGCCGT TCATCGCCCG TCACAACATC TCCGTTGCTG ACTTCATTCA ATTCGCTGGT GCCATCGGTG CCTCGAACTG CGCGGGTGCT CCCCAGCTCG CTGCCTTCGT CGGCCGCAAG  GACGCCACCC AGCCCGCCCC CGACGGCCTC GTCCCCGAGC CGTTCCACAC GCCCGACCAG ATCTTCGACC GTCTCGCGGA CGCGTCTCAG GGCGAGTTCG ACCCCATCCT GACGGTCTGG  CTCCTGACCG CGCACACCGT TGCTGCCGCC AACGACGTCG ACCCCACCAA GTCCGGCCTG CCGTTCGACT CCACCCCCGA GCTCTGGGAC ACGCAGTTCT TCCTCGAGAC CCAGCTCCGC  GGCACGAGCT TCCCCGGCTC CGGCGGCAAC CAGGGCGAGG TCGAGTCTCC CCTTGCGGGC GAGATGCGTC TCCAGTCCGA CCACACCATC GCTCGCGACT CCCGCACGGC ATGCGAGTGG  CAGTCGTTCG TCGACAACCA GCCGAAGGCT CAGCAGATGT TCCAGTTCGT GTTCCACGAC CTTTCCATCT TCGGCCAGGA CATCAACACG CTCGTCGACT GCACTGAAGT CGTCCCCATC  CCGGCTGACC CTCAGGGCCA CACGCACTTC CCCGCTGGCC TGAGCAACGC CGACATCGAG CAGGCTTGTG CCGAGACCCC CTTCCCGACC TTCCCCACCG ACCCCGGACC CAAGACCGCC 
GTCGCCCCCG TCCCCAAGCC CCCTGCCGCC CGGAAGTAA 

Retrieve as FASTA