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Entry information : PraCP01
Entry ID 2551
Creation 2005-11-21 (Filippo Passardi)
Last sequence changes 2011-05-16 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-05-16 (Christophe Dunand)
Peroxidase information: PraCP01
Name PraCP01
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Phytophthora
Organism Phytophthora ramorum    [TaxId: 164328 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PraCP01
start..stop		 S start..stop
PsojCP03 1206 0 1..686 1..687
PraCP02 1200 0 1..686 1..687
PiCP01 1190 0 1..686 1..690
PcapCP02 1181 0 1..686 1..687
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2551' 'join(44814..46874)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 44814..46874 2059  
join(44814..46874)


exon

Literature and cross-references PraCP01
Literature JGI
DNA ref. JGI genome:   scaffold_22 (44814..46874)
mRNA ref. JGI transcript:   77036
Protein sequence: PraCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   686 (665)
PWM (Da):   %s   73499.24 (71455.1)  
PI (pH):   %s   4.94 (4.88) Peptide Signal:   %s   cut: 22 range:22-686
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MNVRLATFVA ALASLSSGAI AGSCPFGYDK VASVANQDRQ ISTELYDPKS CDVIDYDLVK KDLEALMTNS QDFWPADFGH YGGLFIRLAW HCNGSYRRAD GRGGCDGGRI RFNPEHSWAD  NTNLDKALKL LNPIKEKYGD ALSWGDLVVL SGDVAIKSMG GPVLGFCGGR RDDADGTSSL QLGPTPEQEA VAPCAVDGQC KEPLGPTTMG LIYVNPEGPM GVPDPALSVL DVRDTFKRMG  MNDRETVALI GGGHAFGKTH GACPTGPGPS PLEDPENPWP GTCGEGEMKG KGNNTFTSGF EGSWTFTPTK WGNGYFKGLT TLDWEKFDGP GGHVQWRPVP DTNPPVRMLT ADIALLHDPS  YHSISLEFAA DQAALDDAFS HAWYKLMSRD VGPVARCRGN DIPPAQPFQN PLPPTPGKLP NFDSVRSDIR KLLKKSVEGL TSDSSADGTP YNGALFVHAA YQCASTFRIT DYAGGCNGAK  IRFSPQKDWP VNAGVDSIIT ALEPIKKSYP SLSTADLLVL AGQVALQEAG VKTKFLGGRT DAENGEGDDI LAPREYYNTT AIAVQDNIKI LGVSGQEAVA LAGRPRSVAQ QKALGYSGSY 
SNCSEALTND YFNVLLNETW TPVSAKEYKA EGKDLFMLDT DLALLEVPEL KKAVELFASS DHAFKQVFAS AWAKVMTADH FNAASY 

Retrieve as FASTA  
Remarks Genomic sequence (no intron). No EST found.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAACGTCC GTCTCGCCAC ATTCGTCGCC GCGCTAGCGA GCCTTTCTAG CGGCGCTATC GCCGGCAGCT GCCCGTTCGG CTACGACAAG GTCGCGTCCG TGGCCAACCA AGACCGCCAG  ATTTCAACCG AGCTGTACGA CCCCAAGAGC TGCGATGTGA TCGACTACGA TCTCGTCAAG AAGGACCTGG AGGCGCTCAT GACGAACTCG CAGGACTTCT GGCCCGCGGA CTTCGGCCAC  TACGGCGGCC TCTTCATCCG TCTGGCTTGG CACTGCAACG GCTCCTACCG TCGTGCCGAT GGCCGCGGTG GCTGTGACGG TGGTCGCATC CGGTTCAACC CGGAGCACAG CTGGGCCGAC  AACACCAACC TGGACAAGGC GCTTAAGCTG CTGAACCCTA TCAAGGAGAA GTACGGGGAC GCGCTGTCGT GGGGTGACCT CGTTGTGCTG TCGGGTGACG TCGCGATCAA GAGCATGGGT  GGCCCCGTGC TCGGCTTCTG CGGTGGACGT CGCGACGATG CCGACGGTAC CAGCAGCCTG CAGCTTGGCC CGACGCCCGA GCAGGAGGCT GTGGCGCCGT GTGCCGTGGA CGGCCAGTGC  AAGGAGCCGT TGGGCCCCAC CACCATGGGT CTCATCTACG TGAACCCCGA GGGTCCCATG GGCGTCCCTG ACCCCGCGCT GTCGGTGCTT GACGTGCGCG ATACGTTCAA GCGCATGGGC  ATGAACGACC GCGAGACGGT TGCTCTGATC GGCGGTGGCC ACGCCTTCGG CAAGACGCAC GGTGCTTGTC CGACCGGTCC CGGCCCCAGT CCGCTGGAGG ACCCTGAAAA CCCGTGGCCG  GGTACCTGTG GTGAGGGCGA AATGAAGGGC AAGGGCAACA ACACGTTCAC GAGTGGCTTC GAGGGCTCGT GGACGTTCAC ACCCACCAAG TGGGGCAACG GCTACTTCAA GGGCCTCACC  ACGCTGGACT GGGAGAAGTT TGACGGTCCC GGCGGCCACG TGCAGTGGCG CCCCGTGCCC GACACGAACC CTCCCGTTCG CATGCTGACG GCCGACATTG CTCTGCTGCA CGACCCGAGC  TACCACAGCA TCTCGCTCGA GTTCGCAGCG GACCAGGCCG CTCTCGACGA CGCCTTCTCG CACGCCTGGT ACAAGTTGAT GTCTCGCGAT GTGGGCCCCG TAGCCCGCTG CCGTGGCAAC  GACATCCCTC CTGCCCAGCC ATTCCAGAAC CCGCTGCCCC CGACGCCCGG CAAGCTGCCG AACTTCGACT CTGTGCGCTC GGACATCCGC AAGCTCCTGA AGAAATCGGT CGAGGGTCTC  ACCAGTGACT CGAGCGCCGA TGGCACGCCG TACAATGGCG CTCTGTTCGT GCACGCTGCC TACCAGTGTG CATCGACGTT CCGTATCACG GACTACGCCG GGGGCTGCAA CGGTGCCAAG  ATCCGCTTCT CGCCGCAGAA GGACTGGCCG GTGAACGCTG GCGTCGACAG TATCATCACC GCTCTAGAGC CGATCAAGAA GTCGTACCCG AGTCTGTCGA CCGCGGATCT CCTTGTGCTA  GCTGGCCAGG TGGCCCTGCA AGAGGCTGGC GTGAAGACCA AGTTCCTTGG TGGCCGCACG GACGCCGAGA ACGGCGAGGG CGACGACATT CTGGCGCCCC GCGAGTACTA CAACACGACG  GCTATCGCTG TGCAGGACAA CATCAAGATC TTGGGTGTGT CCGGACAGGA GGCTGTGGCT CTTGCCGGTC GCCCACGCAG CGTGGCGCAG CAGAAGGCTC TGGGCTACAG CGGCTCGTAC  AGCAACTGCT CGGAGGCGCT GACCAACGAC TACTTCAACG TGCTGCTGAA CGAGACGTGG ACGCCCGTGT CTGCGAAGGA GTACAAGGCC GAGGGCAAGG ACCTCTTCAT GCTCGACACG  GATCTGGCCC TGCTGGAAGT CCCCGAGCTC AAGAAGGCGG TCGAGTTGTT CGCCTCGAGC GACCACGCCT TCAAGCAGGT CTTCGCCTCG GCCTGGGCCA AGGTCATGAC GGCCGACCAC 
TTCAACGCGG CCAGCTATTA A 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAACGTCC GTCTCGCCAC ATTCGTCGCC GCGCTAGCGA GCCTTTCTAG CGGCGCTATC GCCGGCAGCT GCCCGTTCGG CTACGACAAG GTCGCGTCCG TGGCCAACCA AGACCGCCAG  ATTTCAACCG AGCTGTACGA CCCCAAGAGC TGCGATGTGA TCGACTACGA TCTCGTCAAG AAGGACCTGG AGGCGCTCAT GACGAACTCG CAGGACTTCT GGCCCGCGGA CTTCGGCCAC  TACGGCGGCC TCTTCATCCG TCTGGCTTGG CACTGCAACG GCTCCTACCG TCGTGCCGAT GGCCGCGGTG GCTGTGACGG TGGTCGCATC CGGTTCAACC CGGAGCACAG CTGGGCCGAC  AACACCAACC TGGACAAGGC GCTTAAGCTG CTGAACCCTA TCAAGGAGAA GTACGGGGAC GCGCTGTCGT GGGGTGACCT CGTTGTGCTG TCGGGTGACG TCGCGATCAA GAGCATGGGT  GGCCCCGTGC TCGGCTTCTG CGGTGGACGT CGCGACGATG CCGACGGTAC CAGCAGCCTG CAGCTTGGCC CGACGCCCGA GCAGGAGGCT GTGGCGCCGT GTGCCGTGGA CGGCCAGTGC  AAGGAGCCGT TGGGCCCCAC CACCATGGGT CTCATCTACG TGAACCCCGA GGGTCCCATG GGCGTCCCTG ACCCCGCGCT GTCGGTGCTT GACGTGCGCG ATACGTTCAA GCGCATGGGC  ATGAACGACC GCGAGACGGT TGCTCTGATC GGCGGTGGCC ACGCCTTCGG CAAGACGCAC GGTGCTTGTC CGACCGGTCC CGGCCCCAGT CCGCTGGAGG ACCCTGAAAA CCCGTGGCCG  GGTACCTGTG GTGAGGGCGA AATGAAGGGC AAGGGCAACA ACACGTTCAC GAGTGGCTTC GAGGGCTCGT GGACGTTCAC ACCCACCAAG TGGGGCAACG GCTACTTCAA GGGCCTCACC  ACGCTGGACT GGGAGAAGTT TGACGGTCCC GGCGGCCACG TGCAGTGGCG CCCCGTGCCC GACACGAACC CTCCCGTTCG CATGCTGACG GCCGACATTG CTCTGCTGCA CGACCCGAGC  TACCACAGCA TCTCGCTCGA GTTCGCAGCG GACCAGGCCG CTCTCGACGA CGCCTTCTCG CACGCCTGGT ACAAGTTGAT GTCTCGCGAT GTGGGCCCCG TAGCCCGCTG CCGTGGCAAC  GACATCCCTC CTGCCCAGCC ATTCCAGAAC CCGCTGCCCC CGACGCCCGG CAAGCTGCCG AACTTCGACT CTGTGCGCTC GGACATCCGC AAGCTCCTGA AGAAATCGGT CGAGGGTCTC  ACCAGTGACT CGAGCGCCGA TGGCACGCCG TACAATGGCG CTCTGTTCGT GCACGCTGCC TACCAGTGTG CATCGACGTT CCGTATCACG GACTACGCCG GGGGCTGCAA CGGTGCCAAG  ATCCGCTTCT CGCCGCAGAA GGACTGGCCG GTGAACGCTG GCGTCGACAG TATCATCACC GCTCTAGAGC CGATCAAGAA GTCGTACCCG AGTCTGTCGA CCGCGGATCT CCTTGTGCTA  GCTGGCCAGG TGGCCCTGCA AGAGGCTGGC GTGAAGACCA AGTTCCTTGG TGGCCGCACG GACGCCGAGA ACGGCGAGGG CGACGACATT CTGGCGCCCC GCGAGTACTA CAACACGACG  GCTATCGCTG TGCAGGACAA CATCAAGATC TTGGGTGTGT CCGGACAGGA GGCTGTGGCT CTTGCCGGTC GCCCACGCAG CGTGGCGCAG CAGAAGGCTC TGGGCTACAG CGGCTCGTAC  AGCAACTGCT CGGAGGCGCT GACCAACGAC TACTTCAACG TGCTGCTGAA CGAGACGTGG ACGCCCGTGT CTGCGAAGGA GTACAAGGCC GAGGGCAAGG ACCTCTTCAT GCTCGACACG  GATCTGGCCC TGCTGGAAGT CCCCGAGCTC AAGAAGGCGG TCGAGTTGTT CGCCTCGAGC GACCACGCCT TCAAGCAGGT CTTCGCCTCG GCCTGGGCCA AGGTCATGAC GGCCGACCAC 
TTCAACGCGG CCAGCTATTA A 

Retrieve as FASTA