RedOxiBase: View Perox 2559

Entry information : TpsAPx-R

Entry ID	2559
Creation	2005-12-28 (Nenad Bakalovic)
Last sequence changes	2011-06-14 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-06-14 (Christophe Dunand)

Peroxidase information: TpsAPx-R

Name

TpsAPx-R

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira

Organism

Thalassiosira pseudonana [TaxId: 35128 ]

Cellular localisation

Peroxisomal

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TpsAPx-R start..stop	S start..stop
PtrAPx-R	318	7.2e-109	5..297	39..327
MeAPx09	123	9.1e-34	35..292	34..244
GmAPx06	119	4.72e-32	35..290	34..243
PpeAPx01	119	6.09e-32	3..294	7..247

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	624..1517	894
complement(join(624..1517))

Literature and cross-references TpsAPx-R

Literature	Madera, M. et al., The SUPERFAMILY database in 2004: additions and improvements, Nucl. Acids Res., 32, D235-D239.
DNA ref.	JGI genome: scaffold_506 (1517..624)
mRNA ref.	JGI transcript: 107698

Protein sequence: TpsAPx-R

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	297
PWM (Da):	32831.82
PI (pH):	6.79

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MNDKEREAQL QLASCLVRKS TSDYLHDDPT LAGPFLRLAF HDAATREDSS STSFAAFSGG PNGSIKYELD WSENRGLSRP LKDIEQIHAE IVRNLNISLA DTIALAGAQA VQAARGPTIS IRLGRRDATK ADERNRRNNL QSDTTRSLVD TTLPSAGLDS EGLRLYFGAL GLSDKEFVAL CGAHDLGRHV TLLDMPKACL KNLTRECLEN APMLMPFVAE EPDTFSNSYF LKLLKWNDRR
VALGEVAFIP TDVDLVVDEG LRRYVKHFAR DKAAFYSTFA TAYRKLVEPG TTSVRRY

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron). No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAATGACA AAGAACGAGA AGCCCAGCTT CAATTGGCAT CCTGTCTTGT AAGAAAGTCA ACGTCTGATT ATCTACACGA TGATCCTACG CTGGCTGGTC CGTTTCTTCG GCTTGCCTTT CATGATGCCG CGACGAGAGA GGATTCCAGC AGTACGTCAT TTGCAGCGTT CAGCGGAGGG CCAAACGGAT CCATCAAATA CGAGTTGGAT TGGAGCGAGA ATAGAGGATT ATCTCGCCCT CTAAAAGATA TTGAGCAAAT ACACGCAGAG ATTGTTAGGA ATTTGAACAT ATCGCTAGCT GATACCATTG CATTAGCGGG GGCTCAAGCA GTTCAAGCTG CTCGAGGTCC TACAATTTCT ATTCGGTTGG GAAGGAGAGA TGCCACCAAG GCAGATGAAA GAAATAGAAG AAACAATCTA CAAAGCGATA CAACTAGATC GCTGGTGGAT ACAACTCTTC CTTCTGCCGG GTTGGATAGT GAAGGATTAC GACTCTACTT TGGAGCACTG GGATTGTCAG ACAAAGAGTT CGTTGCATTG TGTGGAGCAC ATGATTTAGG AAGACACGTT ACATTATTGG ATATGCCAAA AGCTTGTCTG AAGAATCTCA CAAGAGAGTG CTTAGAGAAT GCTCCTATGT TAATGCCGTT TGTCGCTGAA GAGCCGGATA CTTTCTCAAA CTCGTACTTC TTGAAGCTGC TAAAGTGGAA CGATAGAAGA GTTGCTCTCG GAGAAGTTGC ATTTATACCG ACAGATGTAG ACTTGGTTGT CGACGAGGGA TTGAGGAGGT ATGTGAAGCA TTTTGCACGC GATAAGGCGG CATTCTATTC TACTTTCGCT
ACAGCATACA GAAAACTCGT TGAACCAGGG ACTACGAGTG TACGAAGGTA CTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA