Entry information : TpsAPx-R
Entry ID 2559
Creation 2005-12-28 (Nenad Bakalovic)
Last sequence changes 2011-06-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-06-14 (Christophe Dunand)
Peroxidase information: TpsAPx-R
Name TpsAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation Peroxisomal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TpsAPx-R
start..stop
S start..stop
PtrAPx-R 318 7.23e-109 5..297 39..327
LuAPx-R01 130 4.76e-36 32..290 102..311
AfiliAPx-R01 130 9.51e-36 29..290 144..356
SmusAPx-R01 129 1.31e-35 36..290 88..295
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2559' 'complement(join(624..1517))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 624..1517 892  
complement(join(624..1517))


exon

Literature and cross-references TpsAPx-R
Literature Madera, M. et al., The SUPERFAMILY database in 2004: additions and improvements, Nucl. Acids Res., 32, D235-D239.
DNA ref. JGI genome:   scaffold_506 (1517..624)
mRNA ref. JGI transcript:   107698
Protein sequence: TpsAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   297 (665)
PWM (Da):   %s   32831.82 (71455.1) Transmb domain:   %s   i5-27o
PI (pH):   %s   6.79 (4.88) Peptide Signal:   %s   cut: 22 range:22-686
Sequence
Send to BLAST
Send to Peroxiscan
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MNDKEREAQL QLASCLVRKS TSDYLHDDPT LAGPFLRLAF HDAATREDSS STSFAAFSGG PNGSIKYELD WSENRGLSRP LKDIEQIHAE IVRNLNISLA DTIALAGAQA VQAARGPTIS  IRLGRRDATK ADERNRRNNL QSDTTRSLVD TTLPSAGLDS EGLRLYFGAL GLSDKEFVAL CGAHDLGRHV TLLDMPKACL KNLTRECLEN APMLMPFVAE EPDTFSNSYF LKLLKWNDRR 
VALGEVAFIP TDVDLVVDEG LRRYVKHFAR DKAAFYSTFA TAYRKLVEPG TTSVRRY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). No EST.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAATGACA AAGAACGAGA AGCCCAGCTT CAATTGGCAT CCTGTCTTGT AAGAAAGTCA ACGTCTGATT ATCTACACGA TGATCCTACG CTGGCTGGTC CGTTTCTTCG GCTTGCCTTT  CATGATGCCG CGACGAGAGA GGATTCCAGC AGTACGTCAT TTGCAGCGTT CAGCGGAGGG CCAAACGGAT CCATCAAATA CGAGTTGGAT TGGAGCGAGA ATAGAGGATT ATCTCGCCCT  CTAAAAGATA TTGAGCAAAT ACACGCAGAG ATTGTTAGGA ATTTGAACAT ATCGCTAGCT GATACCATTG CATTAGCGGG GGCTCAAGCA GTTCAAGCTG CTCGAGGTCC TACAATTTCT  ATTCGGTTGG GAAGGAGAGA TGCCACCAAG GCAGATGAAA GAAATAGAAG AAACAATCTA CAAAGCGATA CAACTAGATC GCTGGTGGAT ACAACTCTTC CTTCTGCCGG GTTGGATAGT  GAAGGATTAC GACTCTACTT TGGAGCACTG GGATTGTCAG ACAAAGAGTT CGTTGCATTG TGTGGAGCAC ATGATTTAGG AAGACACGTT ACATTATTGG ATATGCCAAA AGCTTGTCTG  AAGAATCTCA CAAGAGAGTG CTTAGAGAAT GCTCCTATGT TAATGCCGTT TGTCGCTGAA GAGCCGGATA CTTTCTCAAA CTCGTACTTC TTGAAGCTGC TAAAGTGGAA CGATAGAAGA  GTTGCTCTCG GAGAAGTTGC ATTTATACCG ACAGATGTAG ACTTGGTTGT CGACGAGGGA TTGAGGAGGT ATGTGAAGCA TTTTGCACGC GATAAGGCGG CATTCTATTC TACTTTCGCT 
ACAGCATACA GAAAACTCGT TGAACCAGGG ACTACGAGTG TACGAAGGTA CTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAATGACA AAGAACGAGA AGCCCAGCTT CAATTGGCAT CCTGTCTTGT AAGAAAGTCA ACGTCTGATT ATCTACACGA TGATCCTACG CTGGCTGGTC CGTTTCTTCG GCTTGCCTTT  CATGATGCCG CGACGAGAGA GGATTCCAGC AGTACGTCAT TTGCAGCGTT CAGCGGAGGG CCAAACGGAT CCATCAAATA CGAGTTGGAT TGGAGCGAGA ATAGAGGATT ATCTCGCCCT  CTAAAAGATA TTGAGCAAAT ACACGCAGAG ATTGTTAGGA ATTTGAACAT ATCGCTAGCT GATACCATTG CATTAGCGGG GGCTCAAGCA GTTCAAGCTG CTCGAGGTCC TACAATTTCT  ATTCGGTTGG GAAGGAGAGA TGCCACCAAG GCAGATGAAA GAAATAGAAG AAACAATCTA CAAAGCGATA CAACTAGATC GCTGGTGGAT ACAACTCTTC CTTCTGCCGG GTTGGATAGT  GAAGGATTAC GACTCTACTT TGGAGCACTG GGATTGTCAG ACAAAGAGTT CGTTGCATTG TGTGGAGCAC ATGATTTAGG AAGACACGTT ACATTATTGG ATATGCCAAA AGCTTGTCTG  AAGAATCTCA CAAGAGAGTG CTTAGAGAAT GCTCCTATGT TAATGCCGTT TGTCGCTGAA GAGCCGGATA CTTTCTCAAA CTCGTACTTC TTGAAGCTGC TAAAGTGGAA CGATAGAAGA  GTTGCTCTCG GAGAAGTTGC ATTTATACCG ACAGATGTAG ACTTGGTTGT CGACGAGGGA TTGAGGAGGT ATGTGAAGCA TTTTGCACGC GATAAGGCGG CATTCTATTC TACTTTCGCT 
ACAGCATACA GAAAACTCGT TGAACCAGGG ACTACGAGTG TACGAAGGTA CTGA 

Retrieve as FASTA