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Entry information : SbPrx17 (Sobic.001G379300.1[2.1] / SB01G035990[1.4])
Entry ID 2719
Creation 2006-02-22 (Christophe Dunand)
Last sequence changes 2006-02-22 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-01 (Messaoudi)
Peroxidase information: SbPrx17 (Sobic.001G379300.1[2.1] / SB01G035990[1.4])
Name (synonym) SbPrx17 (Sobic.001G379300.1[2.1] / SB01G035990[1.4])
Class Class III peroxidase    [Orthogroup: Prx208]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx17
start..stop		 S start..stop
BdiPrx42 453 6.63e-162 29..318 34..321
SiPrx122 441 7.28e-157 10..318 27..338
TaPrx238-1B 434 1.09e-154 29..318 29..320
HvPrx17 426 1.37e-151 1..318 1..312
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2719' 'join(59657284..59657496,59657578..59657769,59657888..59658053,59658173..59658558)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 59657284..59657496 211 N° 2 59657578..59657769 190 N° 3 59657888..59658053 164 N° 4 59658173..59658558 384
join(59657284..59657496,59657578..59657769,59657888..59658053,59658173..59658558 )


exon

Literature and cross-references SbPrx17 (Sobic.001G379300.1[2.1] / SB01G035990[1.4])
Literature Plant Genome Database
DNA ref. Phytozome 12:   chromosome_1 (59657284..59658558)
Protein sequence: SbPrx17 (Sobic.001G379300.1[2.1] / SB01G035990[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (294)
PWM (Da):   %s   32773.36 (30523.1) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.71 (7.71) Peptide Signal:   %s   cut: 25 range:25-318
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAASVSVQTIVLLLLAVAAVASAQLSATFYDSSCPRALGTIRSA
VTAAVNRDPRMGASLLRLHFHDCFVQGCDASVLLSDRGSFTGEQNAFPNRGSLRGFDVVDSIKAQVEAVCPRTVSCADILAVAARDSVVTLGGPPYTVLLGRRDSTTASLSQANSDLPSPGSSLASLISGFARKGLTTTDMVALSG
AHTVGQAQCTNFRSRLYGESNLNQSDAAALRANCPQSGGDGNLAPMDLATPNTFDAAFFRGLLSQRGVLHSDQQLFSGGSTDALVQSYASNAGQFRNDFAAAMVRMGSIGVLTGSQGQIR
LSCSSVN

Retrieve as FASTA  
Remarks Complete sequence from genomic DNA (chromo 1, 3 introns). No EST. Incorrect prediction from phytozome (intron 3 is missing).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTGCCTCAGTTTCCGTTCAGACGATCGTCCTCCTGCTCCTGGCCGTTGCCGCTGTGGCGTCGGCGCAGCTGTCGGCGACGTTCTACGACTCGTCCTGCCCGAGGGCGCTGGGC
ACCATCAGGAGCGCCGTGACGGCGGCGGTCAACAGGGACCCCCGCATGGGGGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCCAGAGGCAAGTCCTCGGTCGTCGTCGTCTC
TGCCGCTCGCTCGCTCGCTCAGCTCACGTACGTATTCCGTTCCGTGGCGTGCACAGGGATGCGATGCGTCGGTGCTGCTGTCCGACAGGGGCAGCTTCACAGGGGAGCAGAACGCGTTCC
CCAACCGGGGCTCGCTCAGGGGCTTCGACGTCGTCGACAGCATCAAGGCGCAGGTCGAGGCCGTCTGCCCGCGGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCGCGCGACTCCG
TCGTAACCCCGTAAGATATCGATCGATCAAATAAACAAAATGCGCGTAGATTTTGACAGACAAGCAGCGGCGCTGACCGACACCGATGGTGGTTTATTCTATGCTTCCCTGTGTTTCGCT
GCTTGCAGTTAGGAGGGCCGCCGTACACGGTGCTCTTGGGGAGGAGGGACTCCACCACGGCGAGCCTCTCGCAGGCCAACAGCGACCTCCCTTCTCCGGGCTCCAGCCTCGCCAGCCTCA
TCAGCGGCTTCGCCAGGAAGGGGCTCACCACCACTGACATGGTCGCGCTCTCAGAGGTGCACGCTCTCGAACATGACGCGCATGCAATGCAATGCATGGCAACCCTTCACCTGGACGAGG
GATGCTGTGTCCTGCTGCACTCATTACTCATGTCAGTGGTTGGTCGTACGTGCAGGAGCTCACACGGTCGGGCAGGCGCAGTGCACCAACTTCCGGAGCCGGCTCTACGGCGAGTCCAAC
CTCAACCAGTCGGACGCGGCGGCGCTCAGGGCCAACTGCCCGCAGTCAGGCGGCGACGGCAACCTTGCGCCCATGGACCTGGCGACGCCCAACACGTTCGACGCCGCCTTCTTCCGCGGC
CTGCTCTCGCAGCGCGGGGTGCTGCACTCCGACCAGCAGCTCTTCAGCGGGGGCTCCACCGACGCGCTGGTGCAGAGCTACGCGTCCAACGCGGGGCAGTTCAGAAACGACTTCGCCGCG
GCCATGGTCCGCATGGGCAGCATCGGCGTGCTCACCGGCTCGCAGGGCCAGATCAGGCTCAGTTGCTCCAGCGTCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTGCCTCAGTTTCCGTTCAGACGATCGTCCTCCTGCTCCTGGCCGTTGCCGCTGTGGCGTCGGCGCAGCTGTCGGCGACGTTCTACGACTCGTCCTGCCCGAGGGCGCTGGGC
ACCATCAGGAGCGCCGTGACGGCGGCGGTCAACAGGGACCCCCGCATGGGGGCCTCCCTGCTCAGGCTTCACTTCCACGACTGCTTCGTCCAGGGATGCGATGCGTCGGTGCTGCTGTCC
GACAGGGGCAGCTTCACAGGGGAGCAGAACGCGTTCCCCAACCGGGGCTCGCTCAGGGGCTTCGACGTCGTCGACAGCATCAAGGCGCAGGTCGAGGCCGTCTGCCCGCGGACCGTCTCC
TGCGCCGACATCCTCGCCGTCGCCGCGCGCGACTCCGTCGTAACCTTAGGAGGGCCGCCGTACACGGTGCTCTTGGGGAGGAGGGACTCCACCACGGCGAGCCTCTCGCAGGCCAACAGC
GACCTCCCTTCTCCGGGCTCCAGCCTCGCCAGCCTCATCAGCGGCTTCGCCAGGAAGGGGCTCACCACCACTGACATGGTCGCGCTCTCAGGAGCTCACACGGTCGGGCAGGCGCAGTGC
ACCAACTTCCGGAGCCGGCTCTACGGCGAGTCCAACCTCAACCAGTCGGACGCGGCGGCGCTCAGGGCCAACTGCCCGCAGTCAGGCGGCGACGGCAACCTTGCGCCCATGGACCTGGCG
ACGCCCAACACGTTCGACGCCGCCTTCTTCCGCGGCCTGCTCTCGCAGCGCGGGGTGCTGCACTCCGACCAGCAGCTCTTCAGCGGGGGCTCCACCGACGCGCTGGTGCAGAGCTACGCG
TCCAACGCGGGGCAGTTCAGAAACGACTTCGCCGCGGCCATGGTCCGCATGGGCAGCATCGGCGTGCTCACCGGCTCGCAGGGCCAGATCAGGCTCAGTTGCTCCAGCGTCAACTGA

Retrieve as FASTA