Entry information : SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])
Entry ID 2725
Creation 2010-01-11 (Christophe Dunand)
Last sequence changes 2011-01-28 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])
Name (synonym) SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])
Class Class III peroxidase     [Orthogroup: Prx077]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx[P]38
start..stop
S start..stop
SiPrx134 530 0 109..458 4..353
ZmPrx78 483 2e-170 158..458 84..391
SbPrx37 478 9e-169 157..457 57..364
ZmPrx30 479 9e-169 158..458 84..391
Literature and cross-references SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])
Literature Plant Genome Database.
DNA ref. Phytozome 12:   chromosome_2 (74596348..74589874)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.44354.1
Protein sequence: SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   458 (437)
PWM (Da):   %s   48631.2 (46618.1)  
PI (pH):   %s   7.7 (7.44) Peptide Signal:   %s   cut: 22 range:22-458
Sequence
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Send to Peroxiscan
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MMIAAKLAVV AVLALLGSAS CRQAGFGNGN GARGGITQPP NHPPAPATTP KPKPPASLDR PASPHPHPQP PSYPPATLQQ PTYSPKTSPS PPPPPPTPTY PPTSQGPPVT TPAYPPTSSS  PPPPTVTPTY PPSSPSPPPP TPPPPPPSRP PPSSADAGKK LKVGYYENKC NRSVDVEAIV RKHVSGFDDG TKAGLIRLFF HDCFIRGCDA SVLLDPTSTN QQPEKLGIPN FPSLRGYEVI  DAAKDELEKA CPGKVSCADI VAFAARDASY FLSGGRISFD MPAGRYDGNV SLASETLPNL PPPFAGFDQL EKMFADKGLD AFDMVTLSGA HSIGRSHCSS FSRDRLPPSS TSDMDTAFAA 
KLQASCASAN GTDDNTVMQD YKTPDTYQNV LDRKVLFTSD AALTSDDMAN NLVRVYAIFP WLWEDKFAEA MVKMGRIEIK TDTAGEIRKR CRVVNSKP 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, intron 1). No EST. Frame shift between DDLPER-YQNVL and missing sequence . Probably extra 5' introns.
DNA
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ATGATGATTG CCGCTAAACT CGCTGTTGTC GCAGTGCTCG CACTGCTTGG TTCTGCATCA TGCCGCCAGG CAGGTTTCGG TAACGGTAAT GGCGCCCGTG GCGGCATCAC ACAACCACCC  AATCACCCTC CGGCTCCGGC CACGACACCA AAACCGAAGC CGCCAGCTTC TCTGGATCGT CCGGCCAGCC CACACCCACA CCCACAGCCA CCCTCTTACC CTCCGGCCAC ACTGCAGCAA  CCCACCTATT CTCCGAAGAC GAGCCCAAGC CCGCCGCCAC CGCCGCCCAC TCCCACCTAT CCTCCGACGA GCCAAGGCCC GCCGGTGACC ACGCCCGCCT ATCCTCCAAC GAGCTCAAGC  CCGCCGCCAC CCACGGTCAC GCCCACCTAT CCTCCATCGA GCCCAAGCCC GCCGCCACCC ACGCCGCCGC CGCCGCCGCC GTCCCGGCCT CCGCCCAGCT CAGCTGATGC TGGGAAGAAG  CTCAAGGTTG GATACTACGA GAACAAGTGC AACCGGTCCG TGGATGTGGA GGCCATCGTG AGGAAGCACG TCAGTGGCTT CGACGATGGC ACCAAAGCAG GGCTCATCCG CCTTTTCTTC  CACGACTGCT TCATCCGCGT AAGTCTATTA TTAAGACTTA AGAGTTAAGA CTGTAAAACG AGATGGGTTA ACGAGGTTGC CCTTCCAGGG TCCTCGGCTT CGTGTTATAT AGGGAGAGAA  CAGCCTTCTC CATGGCGTTT ACAACAAGAT AGATTATATT GGTTGGATCT CAACAAGCCC ACTTGTACAA CAATCCAAAC CTACACAATG AATCTAGACA CCAGATCCTA ACCGAAAGGA  TTAGCATCGT TTAACATCCC CTCTCAATCT CAGCCACACT TGAGGTTGAG ATTGTTTCTG AAGATCCGAA ACTTAACAAT AGGCAATGCC TTTGTAAACC CATCAGCTAG CTGATCATCA  GTGTGAACAA AGCGAATCTC CAGCAGTTTT TGGGCCATTC GTTCATGAAC AAAATGAAAA TCTATTTCAA TGTGCTTTGT ACGAGCGTGA AATATAGGAT TAGCAGATAG ATAGGTGGCT  CCAAGATTAT CACACCAAAG CCTTGCCTTG GGGGGATGCG GTATTCTGAG TTCACTCAAG AGTTTCTGAA CCCATAGCAC TTCTGCCGTA GCATTGGCTA AAGATTTGTA TTCAGCCTCT  GTACTGGACC TTGATACTGT TGGCTGCTTC TTTGCTCTCC ATGAAATCAG ATTATCACCC AGAAATACCG CAAAACCACC AGTCGACCTT CGATCATCAA CACAGCCTGC CCAGTCCGCA  TCAGAGAACG CACTGACCAC CATAGACAAT GACTTCCTGA TACAAAGCCC CATATTTGTG GTGCCACGCA CATATCGCAG GATCAACGCA CTGACCACCA TAGACAATGA CTTCCTGATA  CAAAGCCCCA TATTTGTGGT GCCACGCACA TATCGCATGA TCCTCTTCAC GGCACTCCAA TGAACTGTAG TTGGCGCTTG CAAAAACTGA CATACTTTGT TTACAGCGAA AGCAATATCA  GGTCGAGTTA AGGTTAAATA CTGCAAGGCT CCTACCATGC TCCGGTATTT TGTGCAGTCA TCCGGACCAA GCTTGTCACC TGTTTCAAGA CTAAGTTTTT CTGAGTATGA TAGAGGAGTC  TCAATAGGCT TACATTTTTC CATACCTGAC CGCTTGAGAA TATCATTTGC ATACCGTTCT TGGGTGAGAG TCAAACTGTT ATTTCCCCTC TTGACCTCAA TCCCCAAGAA ATAGTGCAAA  TCCCCTAGAT CCTTCAAGGC AAAATCCTTC TGTAAGTCAG ACAACAGAGC TTGAGTAGCT GAGGTAGAAG AGCTGACAAC GATGATATCA TCAACATACA CCAACACGAA CAAAGTATGC  CCGCCTCTGG AGTAATAGAA CAAAGAAGTA TCAGTTTTAG ATGGGACAAA ACCAAGATGT TCCAGCTTGG AACACAGCCG AGCATACCAA GCACGAGGTG CTTGCTTAAG ACCATAAAGA  GCCTTGTCCA GTTTGCACAC AAAGTCAGGG CGTCGTGGAT CAACATAACC GGGTGGCTGA TACATGTACA CTTCCTCATT AAGCACACCA TGAAGGAATG CATTTTGAAC ATCAAGCTGC  CGCAACGACC ACCCTCGTGA CACAGCTATA GACAAGATAA TCCGAATGGT AGCAGCTTTG ACAACAGGAC TAAAAGTGTC CTCATAGTCC AAACCATACC GTTGTTTGTA CCCTTTTGCA  ACTAGTCGTG CCTTGTATCT GTCAAGTGAG CCATCAGCAC GTCGTTTTAT TTTGTAGACC CACTTGCAAT CAGTAACGTT TTTCCCTTTG GGAAGTGGAA CCAAATGCCA CGTCTTATTA  CGAAGCAATG CATCATGTTC TGCATCCATG GCCATTTTCC ACTGAGGGTC TTGCAAAGCA TCACGGATTG TAGTGGGTTC TTCTGCAGAT GTGCTAGCAA GTTGACACCA TCTCACTGTA  CCATCTGTGT ATTGTTTTGG TTTACTGATC CCATGTTGTC CTCGAGTAAC AGGGCGGTGA GCAGCAGGTA ACCCAGGTAT GACACCATCT GGAACAGGCA CAGAAGATCC CAGAGCACCC  ACATCTGATC CGCCCACCAA ATCAGCATGG GGAGCTGAAG CCGCCGAGTC ACCAGAGGGG CTGGGAAGCC TGCGGAGTTT CACGGCGTGC TCCTGACTCG TGCTCGGCGT GGAGTGGCGC  AGAAGATCCG TCAGCGGAGG AAGACGACGC AGACGGCTCG ACGCTCGGGG TGGATTCGCC TGCGGGAACC CCTGAGTGTT CAGGCGCATC AACCTGGGAT CGCCCGCTGC TCCCTTCTGG  CGGACACATG AAATATGGAG CATGGGAGGA CTGCACACCT CCGTTTGTTT CTGAATTTTC ACCTGTTTTC TCACCTGCAC CAGATGTATC TCCCGGGGAA CAGTGTGAAG CATTAGTAGG  CAAAGGAGCA AACAAACTAT GATCAGATGC ATGCATACCC CCAGGATTTA GGAGGACATC AGGAAGGAGA GAAAGCTCGG CTCGCAATTG TGCACCAGCG TTGGGATGAA GGGAAGATAA  AGGAAACACA TGCTCATCAA AAACGACATC GCGTGAGATG TATACTCGAC CTTCCTTGGG ATCCAGGCAC TTAAACCCCT TGTGCTGGTT GCTATACCCT AGAAAGACAC ATTGCTTAGA  GCGAAAATCA AGTTTCCTTG TATTATAAGG CCGTAAGTGA GGCCAGCAGG CGCAGCCAAA GGTTCGAAGG GAGGAGTAAT CAAGTTGTTG ACCAAAGAGA CGGGAGTAGG GTGTATCATT  GTCTATGATA CGTGAGGGCA GCCGGTTTAT GATGAAAACA GCTGTGCTAA AAGCTTCATC CCAAAATTTT AATGGCATGG AGGCGTGTGC TAACAAGGTG AGCCCCATTT CAACTATGTG  GCGATGCTTC CGCTCAGCAG ATCCATTTTG CTGATGTGCA TGAGGACAGA AAACATCGTG AGAAATCCCC ATGCGTGTAA AAAAGGAACT CAAGGCTTGG TATTCCCCAC CCCAATCTGT  TTGCATTGTG CGGATTTTCC GATCAAACTG CCTTTCAACA AGACACTGGA AGTTTTTTAA GCATTGAAAA ACTTCAGATT TTTGGCGTAA CAAATAAATC CAAACAAATT TACTATAATC  ATCAATAAAC GACACATAAT AATTGTTTCA GTCAACAGAG GTTGGGGCAG GTCCCCATAC ATCAGAAAAC ACTAGATCTA GAGGACTAGA AGAAGTACTC GTGGACCTAG GATATGGAAG  CTGGTGACTT TTACCCCTCT GACATGCATC ACAAACACTA GTTTTATTGG ACTCTTTGAT GAAAGGAAGC TTGTGGCGAT GAAGAACTTG TTGGACTATG GCAGTAGATG CATGTCCTAG  ACGATGATGC CACAAGGAGG TAGTTGGCTT GGTTACTCCA AGCACTTCTT TATTCAATGG CTTGACTGGG TAGAGGCCAT TCTCACACGC CCCTTTGAGG AGTGTTTTCT TCGTCGACTG  TTCCTTAACA AGAAAATGAT CAGGGTGAAA TTCGAGGAAA ACATTATTGT CTCGAGCAAT GCGGTTTACA GAAACAAGAT TTTTATTTGC ACAAGGAACA TGAAGAATGT TATGTAACGA  GAGTTTAGTG GAAGGGGCAT GCAAGACACC ATGACCAATG TGTTTGATCT CCATACCTGA GCCACCGGCA GTATGGATCT GGTTCCCGCC GTGATAGCGA TCACGGACAT TGAGCTTGTC  CAGCTCTGAA GTTATGTGGT CAGTTGCCCC AGTATCCATG TACCAGTTGC TGTCCACACC ATAGCTTGCC GTTGCCGATG ACGCTGACTT TTGTGGAGGC AGGAAGGTCG CGTCGAACCT  TTTGAAGCAT GCGACAACGG TGTGCCCCTC CTTCTTGCAC AGCTGGCAGT AGACGCCAGG CTGAAAGGGC TGGCGCCTCT GGTTGTTTGG CCCGCCGCGA CCTCCCCTTG GGCCACGGCC  GAAACCACCG CGGCCGCCTC CACCGCGACC ACCACCACTG CTTCCCGCCG TTGCGGTTTT GGTGGGAGCC GGTGTTGGAG CCAGAGTCGC GACTCCACTT GGCAGCAATG TTTGCAGAGG  ACTGGTTGCT GCCTCCATCA CGGATCTCAA TCCGTTGCTC GTGGCTCACG AGCTGAGTAT ACAGCTGTGT CATGGTGATC GGTTCCACGC GCGCGGTGAC CGCGGTGACC ACCAGGTCGT  AGTCACGATC GAGGCCGATG AGGATGAAGG AGACAAGCTC CTCATCCTCC AACTTCTTGC CAGCAGACGT CATCTCATCT GCCAAGTGCT TCATCTTGCC AAAATAGTCA GAAATTGACG  AGGTACCTTT TGAGGCGGTG GCGAGGGCCA TCCTGGTGGC AATGACGCGC GCCCGGGAGT GCGACGAAAA CAACCCTTCA GTGGTTGCCC AGCAGCGGAT GCGGTGACTT CATGATTCAC  CTGCCCAAGG ATTTCCTTGG ACATATTGGA GAGAAGGTAG TTCAGCACTT GCTGATCCTT CGCTATCCAG ATCTCATATT CTGGATTGAT CGCAGGCGGC TCCTTGGAGT CAATCTGCGT  TCCTGGCTTG GTTTCCAAGA ACTTGGACGG TGGCTCCGCC CCTGGGAGGA TGTACTTGCC GAGCTGATAG CCATTCAGCG CCGACACGAC TTGGGCTCTC CATGAGGCAA AATTTGCCTT  GGTAAGCTTC TCGTTGGTGG GGAGAAAGGT GATTGGGTAG TAGGTAGCAG CAAGCGCGGA GGAAGGAGTA GCCATGGAGT AATTCCGTTA GGAAGAAGGC TCTGGTACCA TGTAAAACGA  GATGGGTTAA CGAGGTTGCC CTTCCAGGGT CCTCGGCTTC GTGTTATATA GGGAGAGAAC AGCCCTCTCC ATGGCGTTTA CAACAAGGAC AGATTACATT GGTTGGATCT CAACAAACCT  ACTTGTACAA CAATCCAAAC CTATACAATG AATCTAGACA CCAGATCCTA ACCGAAAGGA TTAGCATCGT TTAACAAAGA CCTCGATCAT GCTTGCCATT CAGTGAATCA CTACGTATGT  ATATATGATT AGTAGCTGAT CGAGGACAAT TAATATACAT GCACGGTGAC TGTGATCGAT GCATGGCGGG TTCAGGGTTG CGATGCCTCC GTTCTGCTCG ACCCGACCAG CACCAACCAG  CAGCCGGAGA AGCTCGGCAT ACCCAACTTC CCTAGCCTGC GCGGCTACGA GGTGATCGAC GCGGCCAAGG ACGAGCTCGA GAAGGCATGC CCCGGCAAGG TCTCGTGCGC GGACATCGTC  GCCTTCGCCG CCCGCGACGC GTCCTACTTC CTCAGCGGCG GACGCATCAG CTTCGACATG CCCGCCGGCC GCTACGACGG GAATGTGTCC CTCGCCAGCG AGACCCTGCC GAACCTGCCC  CCGCCGTTCG CCGGCTTCGA CCAGCTCGAG AAGATGTTCG CCGACAAGGG GCTCGACGCT TTCGATATGG TCACTCTCTC CGGCGCGCAC AGCATCGGCC GCTCCCACTG CTCGTCCTTC  AGCAGGGACC GCCTCCCGCC CAGCAGCACC TCGGACATGG ACACGGCGTT CGCCGCCAAG CTGCAGGCGA GCTGCGCGTC GGCCAATGGC ACCGACGACA ACACGGTGAT GCAGGACTAC  AAGACCCCCG ACACCTACCA GAACGTGCTG GATCGCAAGG TTCTCTTCAC GTCGGACGCT GCGCTCACCT CGGACGACAT GGCGAACAAC CTGGTGCGTG TCTACGCGAT CTTTCCATGG 
TTGTGGGAGG ACAAGTTCGC GGAAGCCATG GTGAAGATGG GCCGCATCGA GATCAAGACG GACACCGCCG GGGAAATCAG GAAGAGGTGC CGCGTGGTCA ACAGCAAACC ATGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGATTG CCGCTAAACT CGCTGTTGTC GCAGTGCTCG CACTGCTTGG TTCTGCATCA TGCCGCCAGG CAGGTTTCGG TAACGGTAAT GGCGCCCGTG GCGGCATCAC ACAACCACCC  AATCACCCTC CGGCTCCGGC CACGACACCA AAACCGAAGC CGCCAGCTTC TCTGGATCGT CCGGCCAGCC CACACCCACA CCCACAGCCA CCCTCTTACC CTCCGGCCAC ACTGCAGCAA  CCCACCTATT CTCCGAAGAC GAGCCCAAGC CCGCCGCCAC CGCCGCCCAC TCCCACCTAT CCTCCGACGA GCCAAGGCCC GCCGGTGACC ACGCCCGCCT ATCCTCCAAC GAGCTCAAGC  CCGCCGCCAC CCACGGTCAC GCCCACCTAT CCTCCATCGA GCCCAAGCCC GCCGCCACCC ACGCCGCCGC CGCCGCCGCC GTCCCGGCCT CCGCCCAGCT CAGCTGATGC TGGGAAGAAG  CTCAAGGTTG GATACTACGA GAACAAGTGC AACCGGTCCG TGGATGTGGA GGCCATCGTG AGGAAGCACG TCAGTGGCTT CGACGATGGC ACCAAAGCAG GGCTCATCCG CCTTTTCTTC  CACGACTGCT TCATCCGCGG TTGCGATGCC TCCGTTCTGC TCGACCCGAC CAGCACCAAC CAGCAGCCGG AGAAGCTCGG CATACCCAAC TTCCCTAGCC TGCGCGGCTA CGAGGTGATC  GACGCGGCCA AGGACGAGCT CGAGAAGGCA TGCCCCGGCA AGGTCTCGTG CGCGGACATC GTCGCCTTCG CCGCCCGCGA CGCGTCCTAC TTCCTCAGCG GCGGACGCAT CAGCTTCGAC  ATGCCCGCCG GCCGCTACGA CGGGAATGTG TCCCTCGCCA GCGAGACCCT GCCGAACCTG CCCCCGCCGT TCGCCGGCTT CGACCAGCTC GAGAAGATGT TCGCCGACAA GGGGCTCGAC  GCTTTCGATA TGGTCACTCT CTCCGGCGCG CACAGCATCG GCCGCTCCCA CTGCTCGTCC TTCAGCAGGG ACCGCCTCCC GCCCAGCAGC ACCTCGGACA TGGACACGGC GTTCGCCGCC  AAGCTGCAGG CGAGCTGCGC GTCGGCCAAT GGCACCGACG ACAACACGGT GATGCAGGAC TACAAGACCC CCGACACCTA CCAGAACGTG CTGGATCGCA AGGTTCTCTT CACGTCGGAC  GCTGCGCTCA CCTCGGACGA CATGGCGAAC AACCTGGTGC GTGTCTACGC GATCTTTCCA TGGTTGTGGG AGGACAAGTT CGCGGAAGCC ATGGTGAAGA TGGGCCGCAT CGAGATCAAG 
ACGGACACCG CCGGGGAAAT CAGGAAGAGG TGCCGCGTGG TCAACAGCAA ACCATGA 

Retrieve as FASTA