Entry information : SbPrx27 (Sobic.002G003600.1[2.1] / Sb02g000510[1.4])
Entry ID 2728
Creation 2010-01-11 (Christophe Dunand)
Last sequence changes 2014-08-05 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2015-12-14 (Qiang Li)
Peroxidase information: SbPrx27 (Sobic.002G003600.1[2.1] / Sb02g000510[1.4])
Name (synonym) SbPrx27 (Sobic.002G003600.1[2.1] / Sb02g000510[1.4])
Class Class III peroxidase    [Orthogroup: Prx058]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx27
start..stop
S start..stop
SiPrx83 518 0 20..385 15..367
ZmPrx94 501 2e-179 31..341 25..338
PvirPrx01 490 1e-174 31..336 24..331
PvirPrx02 468 4e-166 46..385 37..368
Literature and cross-references SbPrx27 (Sobic.002G003600.1[2.1] / Sb02g000510[1.4])
Literature Plant Genome Database.
DNA ref. Phytozome 12:   chromosome_2 (455955..457731)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.27138.1
Protein sequence: SbPrx27 (Sobic.002G003600.1[2.1] / Sb02g000510[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   386 (350)
PWM (Da):   %s   39770.48 (36377.5) Transmb domain:   %s   i7-29o362-384i (o327-349i)
PI (pH):   %s   4.62 (4.66) Peptide Signal:   %s   cut: 36 range:36-385
Sequence
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Send to Peroxiscan
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MAAARPLLGL AAAAAEAAVL LLLLIGAIAV PAAECQVLVM GAYNETCPQA EDVVLKEMTA MVAKSPDLAA AVLRLFSLDC FVGGCEGSIL LDSTPAGNTA EKDAPLNRGV RGYEVVDAIK  AKLDAACPGV VSCADTLALA ARDSIRLTKG PFIPLPTGRR DGNRSVAADV ALFSPAPDAN ITDIINLFAI RFNLTAKDVA VLSGMLARCS TVSPRLYGFG GDKGASDPAL DGNYTATLRE  QCKPGDNATL VDLDPTTPAT FDADYYALVA GNRGLLSTDA ALLRYPATRD YVERQAKAAS PDEFFADFAE AFVAMSRLDV LTHHKGEIRK VCSKVNPPSE SDSPPVVVPS PSSSAGDAAA 
RSYQLAAATV TGGLLALALA VALVL* 

Retrieve as FASTA  
Remarks Complete sequence from Genomic DNA (chromo 2, 3 introns). Frame shift between "DSTPA" and "GNTAEK" (extra t), HTIG is missing, frame shift between "G" and "EIR" (extra gaga). Incorrect prediction from Phytozome (two extra small introns to fix the frame shift). No EST. Containing motif 'SLDC'.
DNA
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ATGGCAGCAG CAAGACCACT GCTGGGTCTT GCAGCGGCGG CCGCGGAGGC GGCCGTGCTC CTCCTCCTCC TAATCGGTGC GATAGCGGTG CCGGCGGCAG AGTGCCAGGT GCTGGTGATG  GGCGCGTACA ACGAGACTTG CCCGCAGGCG GAGGACGTGG TGTTGAAGGA GATGACGGCC ATGGTGGCCA AGTCGCCGGA CCTGGCGGCC GCCGTGCTCC GGCTCTTCTC CCTCGACTGC  TTCGTGGGCG GCTGCGAGGG CTCCATCCTG CTCGACTCCA CCCCGGCCGG CAACACCGCC GAGAAGGACG CGCCGCTGAA CCGGGGCGTC CGTGGGTACG AGGTGGTGGA CGCCATCAAG  GCCAAGCTCG ACGCCGCCTG CCCCGGCGTC GTCTCCTGCG CCGACACGCT CGCGCTCGCC GCGCGAGACT CCATCAGGCT GGTGCGTGCA TCACTACAAG AGCTAGCATT TATATTTTTA  TTTACAACAA AAAAAAAAAC AATGCCATGG TGATGGATTT GCTGTTGATG AAACATGTAC ATGCATTGTC TTGTGGATGG ACAGACGAAA GGGCCATTCA TCCCGCTCCC AACCGGCCGG  AGGGATGGCA ACCGGTCGGT GGCCGCCGAC GTGGCCCTGT TCTCGCCGGC ACCAGACGCC AACATCACCG ACATCATCAA CCTGTTCGCT ATTAGGTTCA ACCTCACTGC CAAGGACGTC  GCCGTCCTCT CTGGTATGCT CGTCGTTGCT TCATCATCAT ATTTTCCCAT TTGTTGTTCT GTTGAAGAAA TAGGTAATTT TATCATTGTT TGATTGATTT TTCGGTTTGA CTGATTTTAT  CATTGTTTGG TCTGTTTCCA TAAATTAAAG AGGAGTCTTT TTTGTGGTAG CTTGAGGTGA CCCATCTTTT GTACAACGTC CATCAGAGCA TTAATTCTCT GTGACTAATA ATGCAACATA  TAGGCTGCTC TCCTGTCATC TGCAATTCTC TCTCAAGTCA AGTGTTAGCT TTGAAAACAG ACCATTTTAG GTTATTCACA AATTGGTTGC TTTAATTTCT TTTTTGCAAA ATTGCCACTT  GCCTTAAGAA ACCATGTTGA GTGCATATAC CAAGGAAAAA AAAATAAAAG TTGTAGTCTC TCCATTCTAT GGGCCATGTA CTCTACTTTT CTTGGGCTGC TGGCCACTCT CAGGCTAGGC  CCTCTATTTG AGAGCTCGAT GGGCTAAATA GTAGGCCCAC TATCATCAGT ACTATTTCTA TTTGCATCAT GTGATGGATG TGTGTCACTT CACTCTTTTT TTTTCCAGGC GCGGTGCTCG  ACGGTGTCGC CGCGGCTGTA CGGCTTCGGC GGCGACAAGG GCGCGTCGGA CCCGGCGCTG GACGGCAACT ACACGGCGAC CCTGCGCGAG CAGTGCAAGC CCGGCGACAA CGCCACGCTC  GTCGACCTGG ACCCCACCAC CCCGGCCACC TTCGACGCCG ACTACTACGC GCTCGTCGCC GGCAACAGGG GCCTCCTGTC CACCGACGCC GCGCTGCTCC GGTACCCTGC CACCCGCGAC  TACGTCGAGC GCCAGGCCAA AGCCGCCTCG CCGGACGAGT TCTTCGCCGA CTTCGCCGAG GCCTTCGTCG CCATGAGCAG GCTCGACGTG CTCACGCACC ACAAGGGCGA GATCAGGAAG 
GTCTGCTCCA AGGTCAACCC GCCGTCAGAG TCAGACAGCC CGCCGGTGGT GGTGCCGTCC CCGTCGTCCA GCGCCGGCGA CGCTGCCGCT AG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCAGCAG CAAGACCACT GCTGGGTCTT GCAGCGGCGG CCGCGGAGGC GGCCGTGCTC CTCCTCCTCC TAATCGGTGC GATAGCGGTG CCGGCGGCAG AGTGCCAGGT GCTGGTGATG  GGCGCGTACA ACGAGACTTG CCCGCAGGCG GAGGACGTGG TGTTGAAGGA GATGACGGCC ATGGTGGCCA AGTCGCCGGA CCTGGCGGCC GCCGTGCTCC GGCTCTTCTC CCTCGACTGC  TTCGTGGGCG GCTGCGAGGG CTCCATCCTG CTCGACTCCA CCCCGGCCGG CAACACCGCC GAGAAGGACG CGCCGCTGAA CCGGGGCGTC CGTGGGTGGT GGACGCCATC AAGGCCAAGC  TCGACGCCGC CTGCCCCGGC GTCGTCTCCT GCGCCGACAC GCTCGCGCTC GCCGCGCGAG ACTCCATCAG GCTGACGAAA GGGCCATTCA TCCCGCTCCC AACCGGCCGG AGGGATGGCA  ACCGGTCGGT GGCCGCCGAC GTGGCCCTGT TCTCGCCGGC ACCAGACGCC AACATCACCG ACATCATCAA CCTGTTCGCT ATTAGGTTCA ACCTCACTGC CAAGGACGTC GCCGTCCTCT  CTGGTATGCT CGCGCGGTGC TCGACGGTGT CGCCGCGGCT GTACGGCTTC GGCGGCGACA AGGGCGCGTC GGACCCGGCG CTGGACGGCA ACTACACGGC GACCCTGCGC GAGCAGTGCA  AGCCCGGCGA CAACGCCACG CTCGTCGACC TGGACCCCAC CACCCCGGCC ACCTTCGACG CCGACTACTA CGCGCTCGTC GCCGGCAACA GGGGCCTCCT GTCCACCGAC GCCGCGCTGC  TCCGGTACCC TGCCACCCGC GACTACGTCG AGCGCCAGGC CAAAGCCGCC TCGCCGGACG AGTTCTTCGC CGACTTCGCC GAGGCCTTCG TCGCCATGAG CAGGCTCGAC GTGCTCACGC 
ACCACAAGGG CGAGATCAGG AAGGTCTGCT CCAAGGTCAA CCCGCCGTCA GAGTCAGACA GCCCGCCGGT GGTGGTGCCG TCCCCGTCGT CCAGCGCCGG CGACGCTGCC GCTAG 

Retrieve as FASTA