Entry information : SbPrx22 (Sobic.001G500900.1[2.1] / Sb01g046800[1.4])
Entry ID 2729
Creation 2008-10-15 (Christophe Dunand)
Last sequence changes 2011-01-25 (Toky Ramarohetra)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx22 (Sobic.001G500900.1[2.1] / Sb01g046800[1.4])
Name (synonym) SbPrx22 (Sobic.001G500900.1[2.1] / Sb01g046800[1.4])
Class Class III peroxidase    [Orthogroup: Prx126]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx22
start..stop
S start..stop
ZmPrx132 670 0 26..436 23..440
ZmPrx53 661 0 3..441 1..441
SiPrx169 535 0 26..348 23..351
OsPrx36 451 1e-156 28..371 28..382
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 69935995..69936210 216 N° 2 69934633..69935745 1113  
complement(join(69934633..69935745,69935995..69936210))


exon

Literature and cross-references SbPrx22 (Sobic.001G500900.1[2.1] / Sb01g046800[1.4])
Literature Plant Genome Database
DNA ref. Phytozome 12:   chromosome_1 (69936204..69934633)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.8719.1
Protein sequence: SbPrx22 (Sobic.001G500900.1[2.1] / Sb01g046800[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   442 (417)
PWM (Da):   %s   46781.63 (44072.1)  
PI (pH):   %s   4.89 (4.76) Peptide Signal:   %s   cut: 26 range:26-442
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MMMDARLRRLVFLLLLAAAAPLATAQLSQDFYKTSCPDAEKIIFGVVEKRFKADPGTAAGLLRLVFHDCFANGCDASILIDPMSNQASEKEAGPNISVKGYDVIEEIKTELEKKCPGVVSCADIVSVSARDSVKLTGGPEYSVPLGRRDSLVSNREDADNLPGPDIAVPKLIDEFSKQGFNLEEMVAMLGGGHSIGICRCFFIETDAAPIDPGYKKKISDACDGKDSGSVDMDSTSPNTFDGSYFGLVLEKKMPLTIDRLMGMDSKTEPVVQAMADKKTDFVPIFAKAMEKLSNLKVITGKDGEIRKVCSEFNNPQNSSSSSSVIRTSSVNADEVAGLSSSSSRKVGPPDAVETPAMVADEAAAKVPGGVVVSVGGDQQQPPNPEADRPGLKLRGSREPVNPAAPVEPGPGGEDAAKQQAVAALEEKKKRNMAKLRAAQAKM*

Retrieve as FASTA  
Remarks Complete sequence from genomic sequence (chromo 1, intron 1). Very long C-term. No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGATGGACGCCCGCCTCCGCCGCCTCGTCTTCCTCCTCCTCCTCGCGGCCGCGGCGCCGCTGGCCACCGCCCAGCTCTCACAAGATTTCTACAAGACGTCGTGCCCCGACGCCGAG
AAGATCATCTTCGGCGTCGTCGAGAAGCGGTTCAAGGCGGACCCCGGCACCGCCGCCGGCCTCCTCCGCCTCGTCTTCCACGACTGCTTCGCAAAC
GTACGTGTGTATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATGACAACTTACCAGCTAGCTAGGATCGATCAGTCGCTCGTCGTACGTCGTGGGGTGGCAATGGCATGACATGGCATGGCATGGCATGGCATGGCATATACAGGGCTGCGACGCGTCC
ATCTTGATCGACCCGATGTCGAACCAAGCCTCCGAGAAGGAGGCCGGTCCCAACATCTCCGTCAAGGGCTACGACGTGATCGAGGAGATCAAGACGGAGCTGGAGAAGAAGTGCCCCGGC
GTGGTGTCGTGCGCGGACATCGTGTCGGTGAGCGCCCGCGACTCGGTGAAGCTGACGGGAGGGCCCGAGTACTCGGTGCCCCTGGGGCGGCGCGACTCGCTCGTGTCCAACCGCGAGGAC
GCCGACAACCTGCCTGGCCCGGACATCGCGGTGCCCAAGCTCATCGACGAGTTCTCCAAGCAGGGCTTCAACCTCGAGGAGATGGTCGCCATGCTGGGCGGCGGCCACAGCATCGGCATC
TGCAGGTGCTTCTTCATCGAGACCGACGCGGCGCCCATCGACCCCGGGTACAAGAAGAAGATCAGCGACGCCTGCGACGGCAAGGACTCGGGCTCCGTCGACATGGACTCCACCTCGCCC
AACACCTTCGACGGCAGCTACTTCGGCCTCGTCCTGGAGAAGAAGATGCCGCTCACCATCGACCGCCTCATGGGGATGGACTCCAAGACGGAGCCCGTGGTGCAGGCCATGGCCGACAAG
AAGACCGACTTCGTCCCCATCTTCGCCAAGGCCATGGAGAAGCTCAGCAACTTGAAGGTTATCACGGGGAAGGACGGCGAGATCAGGAAGGTGTGCTCCGAGTTCAACAACCCGCAGAAC
AGCAGCAGCAGCTCGTCGGTGATACGGACCAGCTCCGTCAACGCCGACGAGGTGGCCGGCCTGTCGTCCTCGTCCAGCAGGAAGGTGGGCCCTCCCGACGCGGTGGAAACACCCGCCATG
GTGGCGGATGAGGCGGCCGCCAAGGTTCCCGGCGGTGTCGTCGTCAGCGTCGGGGGAGACCAGCAGCAGCCGCCAAACCCGGAAGCCGATAGGCCCGGCCTGAAGCTCCGCGGCAGCCGC
GAACCTGTGAACCCGGCGGCCCCGGTGGAGCCCGGCCCCGGCGGCGAGGATGCTGCCAAGCAGCAGGCGGTGGCGGCCCTGGAGGAGAAGAAGAAGAGGAACATGGCCAAACTCCGGGCC
GCCCAGGCCAAGATGTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGATGGACGCCCGCCTCCGCCGCCTCGTCTTCCTCCTCCTCCTCGCGGCCGCGGCGCCGCTGGCCACCGCCCAGCTCTCACAAGATTTCTACAAGACGTCGTGCCCCGACGCCGAG
AAGATCATCTTCGGCGTCGTCGAGAAGCGGTTCAAGGCGGACCCCGGCACCGCCGCCGGCCTCCTCCGCCTCGTCTTCCACGACTGCTTCGCAAAC
GGCTGCGACGCGTCCATCTTGATC
GACCCGATGTCGAACCAAGCCTCCGAGAAGGAGGCCGGTCCCAACATCTCCGTCAAGGGCTACGACGTGATCGAGGAGATCAAGACGGAGCTGGAGAAGAAGTGCCCCGGCGTGGTGTCG
TGCGCGGACATCGTGTCGGTGAGCGCCCGCGACTCGGTGAAGCTGACGGGAGGGCCCGAGTACTCGGTGCCCCTGGGGCGGCGCGACTCGCTCGTGTCCAACCGCGAGGACGCCGACAAC
CTGCCTGGCCCGGACATCGCGGTGCCCAAGCTCATCGACGAGTTCTCCAAGCAGGGCTTCAACCTCGAGGAGATGGTCGCCATGCTGGGCGGCGGCCACAGCATCGGCATCTGCAGGTGC
TTCTTCATCGAGACCGACGCGGCGCCCATCGACCCCGGGTACAAGAAGAAGATCAGCGACGCCTGCGACGGCAAGGACTCGGGCTCCGTCGACATGGACTCCACCTCGCCCAACACCTTC
GACGGCAGCTACTTCGGCCTCGTCCTGGAGAAGAAGATGCCGCTCACCATCGACCGCCTCATGGGGATGGACTCCAAGACGGAGCCCGTGGTGCAGGCCATGGCCGACAAGAAGACCGAC
TTCGTCCCCATCTTCGCCAAGGCCATGGAGAAGCTCAGCAACTTGAAGGTTATCACGGGGAAGGACGGCGAGATCAGGAAGGTGTGCTCCGAGTTCAACAACCCGCAGAACAGCAGCAGC
AGCTCGTCGGTGATACGGACCAGCTCCGTCAACGCCGACGAGGTGGCCGGCCTGTCGTCCTCGTCCAGCAGGAAGGTGGGCCCTCCCGACGCGGTGGAAACACCCGCCATGGTGGCGGAT
GAGGCGGCCGCCAAGGTTCCCGGCGGTGTCGTCGTCAGCGTCGGGGGAGACCAGCAGCAGCCGCCAAACCCGGAAGCCGATAGGCCCGGCCTGAAGCTCCGCGGCAGCCGCGAACCTGTG
AACCCGGCGGCCCCGGTGGAGCCCGGCCCCGGCGGCGAGGATGCTGCCAAGCAGCAGGCGGTGGCGGCCCTGGAGGAGAAGAAGAAGAGGAACATGGCCAAACTCCGGGCCGCCCAGGCC
AAGATGTAG

Retrieve as FASTA