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Entry information : SbPrx[P]29 (Sobic.002G010600.1 [2.1] / SB02G001135 + SB02G001130 [1.4])
Entry ID 2748
Creation 2010-01-07 (Christophe Dunand)
Last sequence changes 2010-01-07 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbPrx[P]29 (Sobic.002G010600.1 [2.1] / SB02G001135 + SB02G001130 [1.4])
Name (synonym) SbPrx[P]29 (Sobic.002G010600.1 [2.1] / SB02G001135 + SB02G001130 [1.4])
Class Class III peroxidase     [Orthogroup: Prx015]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx[P]29
start..stop		 S start..stop
ZmPrx125 264 1.5e-88 26..165 16..151
ZmPrx125 169 1.11e-51 167..253 234..320
BoPrx45-1Ca_other 241 7.62e-81 41..253 1..228
SiPrx125 243 3.49e-80 27..204 23..191
SiPrx125 160 4.14e-48 167..253 242..328
HvPrx35 235 5.19e-77 14..165 9..155
HvPrx35 140 3.66e-40 167..253 239..326
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1011500..1012254 753  
join(1011500..1012254)


exon

Literature and cross-references SbPrx[P]29 (Sobic.002G010600.1 [2.1] / SB02G001135 + SB02G001130 [1.4])
Literature Plant Genome Database.
DNA ref. Phytozome 12:   chromosome_2 (1011500..1012254)
Protein sequence: SbPrx[P]29 (Sobic.002G010600.1 [2.1] / SB02G001135 + SB02G001130 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   252 (227)
PWM (Da):   %s   26687.68 (24319.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.39 (8.28) Peptide Signal:   %s   cut: 26 range:26-252
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVACSNLRLL AAAAALAFLA LAAAAATVCS AQQQQQLRRN YYASVCPNVE SIVRDAVASK YRETFITVGA TVHLFFHDCF VEGCDASVVV ASTPNSTAAE KDHPVNLSLA GDGFDTVIRA  KAAVDAVPRC RNRVSCADIL AMATRDAIAL AGGPSYAVEL GRLDG*RVAV TMDVVTPRVF DNQYFRNLQA GMGLLASDQL LYTDTRSRPI VDALARSSVA FERAFVEAIT KMGRIGVKTG 
AQGNIRRNCA VLN 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 2, exons 1 and 2), no VALS between GRRD and FDN. Probably a pseudogene. No EST.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTCGCCT GCAGCAACCT GAGGCTTTTG GCGGCGGCGG CGGCGCTGGC GTTCCTGGCG CTGGCGGCGG CGGCTGCCAC CGTGTGCTCG GCGCAGCAGC AGCAGCAGCT CCGTCGCAAC  TACTACGCGA GCGTGTGCCC AAACGTGGAG TCCATCGTCC GCGACGCGGT GGCGAGCAAG TACAGGGAGA CGTTCATCAC GGTGGGCGCG ACGGTGCACC TCTTCTTCCA CGACTGCTTC  GTCGAGGGCT GCGACGCCTC CGTGGTGGTG GCCTCCACGC CCAACTCCAC CGCCGCGGAG AAAGACCACC CCGTGAACCT CTCCCTCGCC GGCGACGGCT TCGACACCGT GATCCGCGCC  AAGGCCGCCG TCGACGCCGT GCCGCGGTGC CGCAACCGGG TCTCCTGCGC CGACATCCTC GCCATGGCCA CCCGCGACGC CATCGCGCTG GCCGGCGGCC CGTCCTACGC CGTCGAGCTC  GGCCGCCTCG ACGGGTGGCG GTGACCATGG ACGTGGTGAC GCCGCGGGTG TTCGACAACC AGTACTTCCG GAATTTGCAG GCCGGGATGG GCCTCCTGGC GTCGGACCAG CTGCTGTACA  CGGACACCAG GTCCAGGCCC ATTGTCGACG CGTTGGCACG GAGTAGCGTC GCGTTTGAAC GGGCCTTCGT GGAGGCCATC ACCAAGATGG GCCGGATTGG GGTCAAGACG GGGGCCCAAG 
GGAACATCCG ACGGAACTGC GCGGTGCTCA ATTGA 

Retrieve as FASTA